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Articles containing the keyword 'genetic'

Category : Article

article id 5605, category Article
Matti Haapanen, Marja-Leena Annala, Pirkko Velling. (1997). Progeny trial estimates of genetic parameters for growth and quality traits in Scots pine. Silva Fennica vol. 31 no. 1 article id 5605. https://doi.org/10.14214/sf.a8506
Keywords: Pinus sylvestris; Scots pine; wood quality; genetic correlation; heritability; progeny testing
Abstract | View details | Full text in PDF | Author Info

Estimates of individual heritability and genetic correlation are presented for a set of 10 growth and quality traits based on data from 16 Scots pine (Pinus sylvestris L.) progeny trials in Finland. Seven of the traits (tree height, stem diameter, crown width, Pilodyn value, branch diameter, branch angle and branch number) were objectively measured, whereas three traits (stem straightness, branching score and overall score) were assessed visually. The genetic correlations were mostly moderate or low, and favourable from the tree breeder's point of view. All variables related to tree size correlated relatively strongly and positively. Tree height exhibited a more favourable genetic relationship with the crown form traits than diameter, the latter showing positive correlation with branch diameter. Except for the slight negative correlation between branch angle and branch diameter, the branching traits were not notably correlated. The pilodyn value was positively correlated with stem diameter, reflecting negative correlation between diameter growth and wood density. The highest genetic correlations occurred among the two visually evaluated quality scores and branch diameter. All of the heritabilities were less than 0.4. Overall score, Pilodyn, branch angle, branching score and tree height showed the highest heritability.

  • Haapanen, E-mail: mh@mm.unknown (email)
  • Annala, E-mail: ma@mm.unknown
  • Velling, E-mail: pv@mm.unknown
article id 5539, category Article
Tore Skrøppa. (1994). Impacts of tree improvement on genetic structure and diversity of planted forests. Silva Fennica vol. 28 no. 4 article id 5539. https://doi.org/10.14214/sf.a9179
Keywords: diversity; tree breeding; seed orchards; production; adaptability; genetic factors; trees
Abstract | View details | Full text in PDF | Author Info

After a presentation of basic biodiversity concepts, reviews are made of studies reporting genetic implications of tree improvement activities: seed treatments, seedling production, provenance transfers, plus tree selection, seed production in seed orchards and progeny testing.

Several of the activities may influence the genetic structure and diversity of the planted forests. The general conclusion is, however, that planted forests are at least as genetically diverse as the natural stands that they replace. The diversity in forest management and use is best assurance for the future adaptability of the forests.

  • Skrøppa, E-mail: ts@mm.unknown (email)
article id 5537, category Article
Anu Mattila, Anne Pakkanen, Juha Raisio, Pekka Vakkari. (1994). Genetic variation in English oak (Quercus robur) in Finland. Silva Fennica vol. 28 no. 4 article id 5537. https://doi.org/10.14214/sf.a9177
Keywords: Quercus robur; allozymes; populations; genetic differences; heterozygosity
Abstract | View details | Full text in PDF | Author Info

Genetic variation in 5 natural stands of Quercus robur L. in Finland was analysed electrophoretically for 13 isozyme loci. Stands were on average polymorphic at 49.2% of the loci, with 2.1 alleles per locus. Observed heterozygosities, ranging from 13.6% to 16.9%, were slightly lower than estimates reported for German stands. The majority of the species’ genetic variation was found within each studied stand, and only 5.5% was between stands. Mean genetic differentiation (∂) was the same as that found in the primary range of the species, but the differentiation estimates (D) for single Finnish population were more variable.

  • Mattila, E-mail: am@mm.unknown (email)
  • Pakkanen, E-mail: ap@mm.unknown
  • Raisio, E-mail: jr@mm.unknown
  • Vakkari, E-mail: pv@mm.unknown
article id 5534, category Article
Hyun Kang, Inger Ekberg, Gösta Eriksson, Johan Ununger. (1994). Second and third growth period responses of Picea abies families to first growth period photoperiodic, light intensity and temperature treatments. Silva Fennica vol. 28 no. 4 article id 5534. https://doi.org/10.14214/sf.a9174
Keywords: Picea abies; growth; maturation; temperature; seedlings; photoperiod; environmental effects; genetic effects; juvenility
Abstract | View details | Full text in PDF | Author Info

Seedlings of Picea abies (L.) H. Karst. full-sib families of contrasting origins were cultivated in a phytotron under different photoperiodic, light-intensity and temperature treatments during their first growth period. The effects of the treatments on juvenile growth traits – whether enhanced or delayed maturation was induces – were observed during the two subsequent growth periods. The following hypotheses were tested: (A) Enhanced maturation can be induced in the first growth period from sowing with (i) a long period of continuous light during active growth (24 weeks vs. 8 weeks); (ii) a shorter night during bud maturation (12 h vs. 16 h); high temperature (25°C vs. 20°C) during (iii) active growth, growth cessation and bud maturation; and during (iv) the latter part of growth cessation and bud maturation only. (B) Delayed maturation can be induced after (i) low light intensity during growth cessation and bud maturation (114 μmol m-2 s-1 vs. 340 μmol m-2 s-1); low temperature (15°C vs. 20°C) during (ii) active growth, growth cessation and bud maturation; and during (iii) the latter part of growth cessation and bud maturation only.

The most dramatic effect was observed after 24 weeks of continuous light during active growth. All traits showed a significantly more mature performance in the second growth period compared with the control. The effect for all but one trait was carried over to the third growth period. This is in accordance with the hypothesis that the activity of apical shoot meristems controls the maturation process. For the other treatments there was only weak or no support for the hypothesis of induction of enhanced or delayed maturation. Strong family effects were observed for all traits. Differential responses of the various latitudinal families were observed, suggesting that family effects must be considered to predict and interpret correctly how plants will respond to environmental effects.

  • Kang, E-mail: hk@mm.unknown (email)
  • Ekberg, E-mail: ie@mm.unknown
  • Eriksson, E-mail: ge@mm.unknown
  • Ununger, E-mail: ju@mm.unknown
article id 5460, category Article
R. C. Schmidtling. (1991). Effect of rootstock and scion on flowering, growth and foliar nutrients of loblolly pine (Pinus taeda) grafts. Silva Fennica vol. 25 no. 4 article id 5460. https://doi.org/10.14214/sf.a15618
Keywords: seed orchards; Pinus taeda; grafting; incompatibility; genetics
Abstract | View details | Full text in PDF | Author Info

In two separate studies, seedlings from 20 loblolly pine (Pinus taeda L.) families and Virginian pine (Pinus virginiana Mill.) were used as root stocks for grafting loblolly pine seed orchard clones. The rootstocks were open-pollinated seedlings from orchard clones chosen to represent a wide range of flowering and survival capabilities, based on their performance in a first-generation seed orchard. Scions were derived from the same 20 loblolly clones. The effects of scion clone were significant and large for nearly all measured traits. Rootstock significantly affected survival, growth, flowering and foliar nutrients of the grafted ramets. Neither survival nor growth of the crafts was related to survival of growth of the orchard clones from which their rootstocks were derived, however. Survival of incompatible clones was enhanced by grafting on genetically related rootstocks.

The PDF includes an abstract in Finnish.

  • Schmidtling, E-mail: rs@mm.unknown (email)
article id 5458, category Article
Jaroslaw Burczyk, Grzegorz Kosiński, Andrzej Lewandowski. (1991).  . Silva Fennica vol. 25 no. 4 article id 5458. https://doi.org/10.14214/sf.a15616
English title: Mating pattern and empty seed formation in relation to crown level of Larix decidua (Mill.) clones.
Keywords: seeds; crown; Larix decidua; mating systems; genetic load; grafting
Abstract | View details | Full text in PDF | Author Info

The mating system was analysed in the upper and lower crown of two groups of European larch (Larix decidua Mill.) clones divided according to the percentage of full seeds in the upper and lower crown parts. The overall multilocus estimate of outcrossing rate (t) was calculated to be 0.929. The differences of outcrossing rates between crown levels and clonal groups respectively were not statistically significant. The t estimates were greater for the upper crown level and for clones with higher percentage of full seeds in the upper crown level. However, among all observations there was no correlation between outcrossing rates and percentages of full seeds for particular crown levels and groups of clones. Observed similarity of outcrossing among grafts of the same clones may indicate genetic control of self-fertilization rate in individual European larch. 

The PDF includes an abstract in Finnish.

  • Burczyk, E-mail: jb@mm.unknown (email)
  • Kosiński, E-mail: gk@mm.unknown
  • Lewandowski, E-mail: al@mm.unknown
article id 5350, category Article
Heikki Hänninen, Paavo Pelkonen. (1988). Frost hardiness and over-wintering of forest trees. Silva Fennica vol. 22 no. 3 article id 5350. https://doi.org/10.14214/sf.a15507
Keywords: frost hardiness; breeding; frost damage; genetic variation; dormancy; annual cycle of development; nursery management
Abstract | View details | Full text in PDF | Author Info

This issue of Silva Fennica consists of eight articles, which are based on a co-nordic conference ”Frost hardiness and over-wintering in forest tree seedlings”, held in Joensuu, Finland, during December 1–3, 1986. The whole annual cycle of the trees is considered. Emphasis is given on methods for the study of frost hardiness, genetic variation in frost hardiness, nitrogen metabolism, bud dormancy release, and joint effect of natural and anthropogenic stress factors in the winter damage of forest trees. Practical implications for tree breeding and nursery management are discussed.

The PDF includes an abstract in Finnish.

  • Hänninen, E-mail:
  • Pelkonen, E-mail:
article id 5160, category Article
P. M. A. Tigerstedt. (1982). Metsäpuiden populaatiogenetiikka. Helsingissä 1981 pidetyn symposion tutkimusraportit. Silva Fennica vol. 16 no. 2 article id 5160. https://doi.org/10.14214/sf.a15075
English title: Population genetics of forest trees.
Original keywords: metsäntutkimus; metsänjalostus; kokoukset; siemenviljelmät; metsägenetiikka; populaatiogenetiikka; populaatiorakenne; sopeutuminen ympäristöolosuhteisiin; ekologinen erilaistuminen
English keywords: adaptation; seed orchards; population structure; population genetics; forest research; forest tree breeding; forest genetics; conference; ecological variation
Abstract | View details | Full text in PDF | Author Info

The publication comprises proceedings of a conference held in Helsinki in 1981. Forest tree populations are investigated for population genetic structure, mating systems, mechanisms of genetic adaptation and ecological adaptation. Methods and techniques used in population genetic research of forest trees are presented. Much concern is given to applications by means of forest tree breeding, particularly the seed orchard breeding technique. Generally, the application of population genetics in cultivated forests is discussed.

The PDF includes a preface and the presentations of the conference (25 short papers) in English, and a comprehensive summary of the themes of the conference in Finnish.

  • Tigerstedt, E-mail:
article id 5068, category Article
S. A. Petrov. (1980). Quantitative analysis of the effect of genotype and environment in forest tree populations. Silva Fennica vol. 14 no. 1 article id 5068. https://doi.org/10.14214/sf.a15009
Keywords: heritability; population structure; population genetics; genotype; Symposiums; intrapopulation variability; environment; quantitative characteristics
Abstract | View details | Full text in PDF | Author Info

The paper discusses the theoretical basis of quantitative analysis of the effect of genotype and environment in forest trees. Perhaps the main problem in the understanding of the laws of intrapopulation variability of the species of woody forest plants is the study of the structure of their populations. It may be characterized by a number of parameters. The intrapopulation variability of quantitative characteristics appears as a result of environmental and genetic factors, but to determine the relative weight of these factors in a concrete case is not easy. The study of the structure of a population by its quantitative characteristics has a wider task: to establish the relevance of the hereditary differences of the individuals of a population. Also, the differences caused by diverse growth conditions and how they are reflected in the level of general phenotypic variability of the quantitative characteristics in a given population has to be identified. The author gives examples of assessment of heritability in forest trees.

The PDF includes a summary in Finnish.

  • Petrov, E-mail: sp@mm.unknown (email)
article id 5058, category Article
Max Hagman. (1980). Suomalais-neuvostoliittolainen metsägenetiikan ja siemenhuollon symposiumi Punkaharjulla 17.–18.8.1978. Silva Fennica vol. 14 no. 1 article id 5058. https://doi.org/10.14214/sf.a14999
English title: Reports of the Finnish-Soviet symposium on forest genetics and forest tree seed production, Punkaharju, Finland, August 17-18. 1978.
Original keywords: metsänjalostus; Suomi; kokoukset; siemenviljely; Neuvostoliitto; seminaarit; genetiikka
English keywords: Finland; seed orchards; forest tree breeding; Soviet Union; USSR; symposium; forest genetics
Abstract | View details | Full text in PDF | Author Info

As a part of the scientific and technical cooperation between Finland and the USSR a symposium and an excursion on forest genetics and seed production was organized in Finland in August 1978. The symposium paper presented at Punkaharju are published here in order to bring them available for a wider audience.

The 12 symposium reports deal with the following subjects: Practical application of forest genetic research (A.I. Novoselceva), geographical variability and provenance transfer (E.P. Prokazin, M. Hagman, I. Etverk), variation in wood density (P. Velling), variation of flowering and seed crops in seed orchards (Y.P. Efimov), and natural stands (V. Koski), vegetative propagation (J. Niiranen), seed size effects and early test problems (J. Mikola), quantitative analysis of genotypic and environmental effects (S.A. Petrov), hormonal induction of flowering (O. Luukkanen) and x-ray photography analysis of the ageing of seeds during storage (M. Ryynänen).

The PDF includes a summary in Finnish.

  • Hagman, E-mail: mh@mm.unknown (email)
article id 4888, category Article
Olavi Luukkanen. (1973). Havaintoja kuusen vapaapölytysjälkeläistöjen ja männyn metsikköalkuperien CO2-aineenvaihdunnasta. Silva Fennica vol. 7 no. 4 article id 4888. https://doi.org/10.14214/sf.a14726
English title: Observations on CO2 exchange in open pollinated progenies of Norway spruce and provenances of Scots pine.
Original keywords: kuusi; mänty; metsänjalostus; pluspuu; fotosynteesi; geneettinen muuntelu; pimeähengitys; yhteyttämisteho
English keywords: Pinus sylvestris; Norway spruce; Picea abies; Scots pine; tree breeding; photosynthesis capacity; genetic variance; dark respiration
Abstract | View details | Full text in PDF | Author Info

Photosynthesis and dark respiration in five families of autochtonous Norway spruce (Picea abies (L.) H. Karst.) and in seedlings from twenty Finnish stands of Scots pine (Pinus sylvestris L.) were investigated in constant environmental conditions. Values of CO2 exchange were compared with the height growth and weight of seedlings in Norway spruce and with the weight alone in Scots pine. No statistically significant differences were found in CO2 exchange among progenies or stands. Photosynthetic efficiency and photosynthetic capacity showed a positive correlation both in spruce and in pine. Growth and net photosynthetic capacity were linearly and positively correlated in pine. Spruce and a higher light compensation point than pine. The use of an open IRGA system with several simultaneous measurements and the trap-type cuvette construction in genetic work are discussed.

The PDF includes a summary in English.

  • Luukkanen, E-mail: ol@mm.unknown (email)
article id 4869, category Article
Ole Oskarsson, P. M. A. Tigerstedt. (1972). Metsänjalostuksen mahdollisuudet II. Silva Fennica vol. 6 no. 3 article id 4869. https://doi.org/10.14214/sf.a14672
English title: The possibilities in forest tree breeding II. Selection differences and genetic gains in selected seed stands of Scots pine.
Original keywords: mänty; metsänjalostus; tilavuuskasvu; valintahyöty; siemenkeräysmetsät; fenotyyppi; kuutiokasvu
English keywords: Pinus sylvestris; Scots pine; volume growth; genetic gain; forest tree breeding; seed stands; phenotype
Abstract | View details | Full text in PDF | Author Info

The aim of this study was to estimate the genetic gain of volume growth in Scots pine (Pinus sylvestris L.) selected seed stands. To obtain highest possible accuracy, the estimations are based on a large statistical material comprising 197 separate seed stands. It is concluded that the genetic gain of volume growth ranges between 7.4–15.0%. Unwanted pollen contaminations may, however, in the worst case halve this genetic gain.

The PDF includes a summary in English.

  • Oskarsson, E-mail: oo@mm.unknown (email)
  • Tigerstedt, E-mail: pt@mm.unknown
article id 4868, category Article
Mikko Tormilainen. (1972). Havaintoja Oitin siemenviljelyksen mäntykloonien kukinnasta ja käpysadosta. Silva Fennica vol. 6 no. 2 article id 4868. https://doi.org/10.14214/sf.a14671
English title: Studies of flowering and cone crop in a seed orchard of Scots pine.
Original keywords: Etelä-Suomi; mänty; kloonit; siemenviljelmä; siemenviljely; kukinta; käpysato; geneettinen vaihtelu
English keywords: Pinus sylvestris; Scots pine; flowering; genetic variation; seed orchards; clones; Southern Finland; cone production
Abstract | View details | Full text in PDF | Author Info

Male and female flowering, cone crop, and some vegetative characteristics were studied in grafts 10 to 16 years of age in a clonal seed orchard of Scots pine (Pinus sylvestris L.). Genetic variation was found between clones in flowering as well as in cone production. Clone evaluation resulted in similar classifications of clones in different years. A regression analysis showed that crown size clearly increased but previous height growth slightly decreased flowering and cone production. The percentage of pollinated female strobili did not differ between clones.

The PDF includes a summary in English.

  • Tormilainen, E-mail: mt@mm.unknown (email)
article id 4816, category Article
P. M. A. Tigerstedt, Eero Malmivaara. (1970). Metsänjalostuksen mahdollisuudet I.Pluspuiden valintaero ja siemenviljelysten valintahyöty. Silva Fennica vol. 4 no. 2 article id 4816. https://doi.org/10.14214/sf.a14605
English title: The possibilities in forest tree breeding. I Selection differential of plus trees and genetic gain in seed orchards in Finland.
Original keywords: mänty; metsänjalostus; siemenviljelmät; pluspuut; valintahyöty; periytyvyys; vieraspölytys
English keywords: Pinus sylvestris; Scots pine; tree breeding; seed orchards; genetic gain; heredity; selection differential; foreign pollen sources
Abstract | View details | Full text in PDF | Author Info

An attempt was made to estimate critically the genetic gain in clonal seed orchards of Scots pine (Pinus sylvestris L.) in Finland. The selection differential of Scots pine and Norway spruce (Picea abies (L.) H. Karst.) is calculated on the basis of filed information on selected plus trees which has been kept by the genetic register at the Finnish Forest Research Institute. The differentials were computed as realized differences in height between plus-trees and normal stand characteristics on respectively site class and as a function of age.

The genetic gain in height growth of Pinus sylvestris was computed on the basis of information on selection differential and heritability. This genetic gain is between 2.6–4.4% provided there is no pollen contamination from unknown sources outside the seed orchard. The genetic gain of volume growth in Scots pine is about 7–15%, provided there is no pollen contamination in the seed orchard. However, according to investigations, there is invariably some pollen contamination in this kind of seed orchards. The contamination decreases to about 30–50% as the orchard matures and starts to produce endemic pollen. If the pollination would be entirely due to foreign pollen sources, the mathematically calculated genetic gain would be 3.5–7.5%.

The PDF includes a summary in English.

  • Tigerstedt, E-mail: pt@mm.unknown (email)
  • Malmivaara, E-mail: em@mm.unknown

Category : Article

article id 7512, category Article
Mauno Pesonen, Arto Kettunen, Petri Räsänen. (1995). Non-industrial private forest landowners’ choices of timber management strategies. Acta Forestalia Fennica no. 250 article id 7512. https://doi.org/10.14214/aff.7512
Keywords: forest owners; timber management strategies; genetic algorithm; strategic decision making
Abstract | View details | Full text in PDF | Author Info

The factors affecting the non-industrial, private forest owners’ (NIPF) strategic decisions in management planning are studied. A genetic algorithm is used to induce a set of rules predicting potential cut of the forest owners’ choices of preferred timber management strategies. The rules are based on variables describing the characteristics of the landowners and their forest holdings. The predictive ability of a genetic algorithm is compared to linear regression analysis using identical data sets. The data are cross-validated seven times applying both genetic algorithm and regression analyses in order to examine the data-sensitivity and robustness of the generated models.

The optimal rule set derived from genetic algorithm analyses included the following variables: mean initial volume, forest owner’s positive price expectations for the next eight years, forest owner being classified as farmer, and preference for the recreational use of forest property. When tested with previously unseen test data, the optimal rule set resulted in a relative root mean square error of 0.40.

In the regression analyses, the optimal regression equation consisted of the following variables: mean initial volume, proportion of forestry income, intention to cut extensively in future, and positive price expectations for the next two years. The R2 of the optimal regression equation was 0.3 and the relative root mean square error from the test data 0.38.

In both models, mean initial volume and positive stumpage price expectations were entered as significant predictors of potential cut of preferred timber management strategy. When tested with complete data set of 201 observations, both the optimal rule set and the optimal regression model achieved the same level of accuracy.

  • Pesonen, E-mail: mp@mm.unknown (email)
  • Kettunen, E-mail: ak@mm.unknown
  • Räsänen, E-mail: pr@mm.unknown
article id 7620, category Article
Min-Sup Chung. (1981). Biochemical methods for determining population structure in Pinus sylvestris L. Acta Forestalia Fennica no. 173 article id 7620. https://doi.org/10.14214/aff.7620
Keywords: Scots pine; tree breeding; Finland; genetic variation; population structure; plus trees; self-fertilization
Abstract | View details | Full text in PDF | Author Info

Studies on Finnish Scots pine (Pinus sylvestris L.) plus tree clones by monoterpene and isozyme analyses was undertaken to further investigate mating system, population structure and pollination. Six allozyme systems (3 GOT, 1 GDH and 2 LAP) were properly analysed on the basis of segregation. Monoterpenes were analysed from needle material and segregation in high and low 3-carene content was found to depend on two alleles C and c. Thus, six allozyme systems and one monoterpene system were used as markers in this study.

It was shown that the northern clonal group maintains a much genetic variation as the central or southern clonal groups. The conditional probability of self-fertilization in about 20-year old clones estimated by the multilocus model was 14.1%, of which 8% originate from mating between trees that carry the same alleles to one of the maternal parent at some loci and 6% through self-fertilization.

There was no prominent difference in allele frequency of male gametes that pollinated the very early or very late flowering clones. The northern clonal group has higher a lower frequency of alleles GOT B2 and B3 respectively than of the southern clonal groups. The artificial plus tree selection, particularly in northern Finland, appears to favour heterozygous genotypes for the alleles that control 3-carene content n Scots pine.

The PDF includes a summary in Finnish.

  • Chung, E-mail: mc@mm.unknown (email)

Category : Research article

article id 23072, category Research article
Matti Haapanen. (2024). Realised genetic gains from past Finnish silver birch seed orchards. Silva Fennica vol. 58 no. 1 article id 23072. https://doi.org/10.14214/sf.23072
Keywords: Betula pendula; seed orchards; genetic gain; forest reproductive materials
Highlights: Seed orchard materials generally outperformed unimproved trees in all growth and quality traits, but individual seed orchards showed substantial performance variability; Realised gains in stem volume and forking showed an increasing temporal trend, whereas gains in branch quality were positive and steady; Gains in stem volume and branch quality trade off slightly; The bi-clonal seed orchard variety “JR-2” emerged as the best overall performer across all the seed orchards, whereas the older variety “JR-1” was mediocre; An alternative statistical concept, D-value, was introduced to compare levels of genetic gains for different scaled, normally distributed traits.
Abstract | Full text in HTML | Full text in PDF | Author Info

Genetic gains realised through silver birch (Betula pendula Roth) seed orchards were studied using data from common-garden trials established at 34 sites in southern and central Finland. The test materials include seedlots representing 19 commercial seed orchards that operated between 1972 and 2009, and 21 natural stands. All the trials were assessed for several growth and quality traits between the ages of 9 and 24. Realised gains were estimated based on univariate linear mixed models with corrections for latitudinal seed transfer effects. Overall, seed orchard materials outperformed unimproved reference materials in all the traits but results for individual seed orchards varied substantially. Stem volume gains ranged from 1.0% to 31.1%. Improved trees had, on average, 6.8% (up to 26.7%) fewer ramicorn branches and 16.2% (up to 57.6%) fewer forks than unimproved trees. Branch and overall quality showed consistently positive gains. More recently established seed orchards performed better than older ones, and seed orchards with fewer clones outperformed those with dozens of clones. "JR-1" and "JR-2" bi-clonal seed orchards fared differently, with "JR-1" showing modest genetic gains and "JR-2" emerging as the top overall performer across all seed orchards. An alternative statistical concept, the D-value, was utilised to assess the magnitude of genetic gain for different scaled, normally distributed traits. Average D-values implied a similar level of improvement for stem volume, branch quality, and forking, and a smaller gain for stem slenderness and the number of ramicorn branches. The results for individual seed orchards suggest a slight trade-off between stem volume growth and branch quality.

article id 10512, category Research article
Mateusz Liziniewicz, Ignacio Barbeito, Andis Zvirgzdins, Lars-Göran Stener, Pentti Niemistö, Nils Fahlvik, Ulf Johansson, Bo Karlsson, Urban Nilsson. (2022). Production of genetically improved silver birch plantations in southern and central Sweden. Silva Fennica vol. 56 no. 1 article id 10512. https://doi.org/10.14214/sf.10512
Keywords: Betula pendula; planting; generalized algebraic difference approach; genetic gain; stand basal area starting function
Highlights: The basal area development of genetically improved birch in Sweden was modeled using a generalized algebraic difference approach; The best model fit, both graphically and statistically was delivered by the Korf base model; The analysis of realized gain trial showed a stability of relative differences in basal area between tested genotypes.
Abstract | Full text in HTML | Full text in PDF | Author Info

Investing in planting genetically improved silver birch (Betula pendula Roth) in Swedish plantations requires understanding how birch stands will develop over their entire rotation. Previous studies have indicated relatively low production of birch compared to Norway spruce (Picea abies (L.) Karst.) and Scots pine (Pinus sylvestris L.). This could result from using unrepresentative basic data, collected from unimproved, naturally-regenerated birch (Betula spp.) growing on inventory plots often located in coniferous stands. The objective of this study was to develop a basal area development function of improved silver birch and evaluate production over a full rotation period. We used data from 52 experiments including planted silver birch of different genetic breeding levels in southern and central Sweden. The experimental plots were established on fertile forest sites and on former agricultural lands, and were managed with different numbers of thinnings and basal area removal regimes. The model best describing total stand basal area development was a dynamic equation derived from the Korf base model. The analysis of the realized gain trial for birch showed a good stability of the early calculated relative differences in basal area between tested genotypes over time. Thus, the relative difference in basal area might be with cautious used as representation of the realized genetic gain. On average forest sites in southern Sweden, improved and planted silver birch could produce between 6–10.5 m3 ha–1 year–1, while on fertile agriculture land the average productivity might be higher, especially with material coming from the improvement program. The performed analysis provided a first step toward predicting the effects of genetic improvement on total volume production and profitability of silver birch. However, more experiments are needed to set up the relative differences between different improved material.

  • Liziniewicz, The Forestry Research Institute of Sweden, Ekebo, SE-268 90 Svalöv, Sweden E-mail: mateusz.liziniewicz@skogforsk.se
  • Barbeito, Southern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, Alnarp, Sweden; Université de Lorraine, AgroParisTech, INRAE, UMR Silva, Nancy, France E-mail: ignacio.barbeito@slu.se
  • Zvirgzdins, Southern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, Box 49, 23053 Alnarp, Sweden E-mail: andis.zvirgzdins@slu.se (email)
  • Stener, The Forestry Research Institute of Sweden, Ekebo, SE-268 90 Svalöv, Sweden E-mail: lg.stener@telia.com
  • Niemistö, Natural Resources In-stitute Finland (Luke), Natural resources, Seinäjoki, Finland E-mail: pentti.niemisto@luke.fi
  • Fahlvik, The Forestry Research Institute of Sweden, Ekebo, SE-268 90 Svalöv, Sweden E-mail: nils.fahlvik@skogforsk.se
  • Johansson, Tönnersjöheden Experimental Forest, SLU, Simlångsdalen, Sweden E-mail: ulf.johansson@slu.se
  • Karlsson, The Forestry Research Institute of Sweden, Ekebo, SE-268 90 Svalöv, Sweden E-mail: curly.birch@gmail.com
  • Nilsson, Southern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, Box 49, 23053 Alnarp, Sweden E-mail: urban.nilsson@slu.se
article id 10220, category Research article
Arnis Gailis, Pauls Zeltiņš, Andis Purviņš, Juris Augustovs, Valts Vīndedzis, Inga Zariņa, Āris Jansons. (2020). Genetic parameters of growth and quality traits in open-pollinated silver birch progeny tests. Silva Fennica vol. 54 no. 2 article id 10220. https://doi.org/10.14214/sf.10220
Keywords: Betula pendula; tree breeding; genetic gain; genetic parameters
Highlights: Growth and stem quality traits were under strong genetic control; Weak genetic correlations between tree growth and stem quality were found; Strong age-age and type-B correlations suggest robust improvement over time and different environments; Simultaneous improvement of growth and stem quality might be applicable.
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Genetic parameters of growth and stem quality traits were estimated for open-pollinated silver birch Betula pendula Roth progenies in Latvia at the age of 10 and 14 years. Tree height and stem volume were found to be under strong genetic control at both inventories (narrow-sense heritabilities varied from 0.41 to 0.66). Mainly low heritabilities were found for stem defects, yet genetic control of branch diameter, stem straightness and overall stem quality varied from low to high depending on study site. High additive genetic coefficient of variation was found for stem volume (25.3–32.5%). Genetic correlations among growth traits were strong and positive (0.90–0.99). Mainly weak genetic correlations between growth and quality traits implied simultaneous improvement. Still, strong negative correlations between branch angle and stem straightness might result in enlarged knot size for straighter logs. The genetic age-age correlations were strong. Weak genotype by environment interaction and stability of best genotypes over different sites was indicated by strong genetic correlations between trials. Each growth or quality trait alone showed substantial improvement in terms of estimated genetic gain (up to 62% over trial mean for stem volume). Therefore, selection index combining both growth and stem quality may be developed.

  • Gailis, Latvian State Forest Research Institute Silava, 111 Rigas street, Salaspils LV-2169, Latvia E-mail: arnis.gailis@silava.lv
  • Zeltiņš, Latvian State Forest Research Institute Silava, 111 Rigas street, Salaspils LV-2169, Latvia ORCID https://orcid.org/0000-0002-6286-5814 E-mail: pauls.zeltins@silava.lv (email)
  • Purviņš, Latvian State Forest Research Institute Silava, 111 Rigas street, Salaspils LV-2169, Latvia E-mail: andis.purvins@silava.lv
  • Augustovs, Latvian State Forest Research Institute Silava, 111 Rigas street, Salaspils LV-2169, Latvia E-mail: juris.augustovs@silava.lv
  • Vīndedzis, Latvian State Forest Research Institute Silava, 111 Rigas street, Salaspils LV-2169, Latvia E-mail: valts.vindedzis@silava.lv
  • Zariņa, Latvian State Forest Research Institute Silava, 111 Rigas street, Salaspils LV-2169, Latvia E-mail: inga.zarina@silava.lv
  • Jansons, Latvian State Forest Research Institute Silava, 111 Rigas street, Salaspils LV-2169, Latvia E-mail: aris.jansons@silava.lv
article id 10000, category Research article
Hamed Yousefzadeh, Rasta Rajaei, Anna Jasińska, Łukasz Walas, Yann Fragnière, Gregor Kozlowski. (2018). Genetic diversity and differentiation of the riparian relict tree Pterocarya fraxinifolia (Juglandaceae) along altitudinal gradients in the Hyrcanian forest (Iran). Silva Fennica vol. 52 no. 5 article id 10000. https://doi.org/10.14214/sf.10000
Keywords: plant variation; Caucasian wingnut; population genetics; refugium; riparian forest; river system
Highlights: The Caucasian wingnut (Pterocarya fraxinifolia Spach) is an emblematic and relict riparian tree with limited distribution in Hyrcanian forest which investigating its genetic population structure and diversity along altitudinal gradients, and migration patterns are novel; We concluded that rivers are the main seed dispersal vector among P. fraxinifolia populations and there was no trend from upstream to downstream; The high level of gene flow and uniform genetic diversity along each river system suggest the “classical” metapopulation structure of the species.
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Riparian trees, especially relict trees, are attractive and important for research to understand both past and recent biogeographical and evolutionary processes. Our work is the first study to elucidate the genetic diversity and spatial genetic structure of the canopy-dominating riparian Pterocarya fraxinifolia (Juglandaceae) along two altitudinal gradients in different river systems of the Hyrcanian forest, which is one of the most important refugium of relict trees in Western Eurasia. Altitudinal gradients were chosen along two river systems at 100, 400 and 900 m a.s.l. Leaf samples were collected from 116 trees, and the genetic diversity was evaluated with eight SSR markers. Overall, 39 alleles were identified for all of the populations studied. The observed heterozygosity (Ho) varied from 0.79 to 0.87 (with a mean of 0.83). The results of the AMOVA analysis indicated that the variation within populations was 88%, whereas the variation among populations was 12% for all of the gradients. A structure analysis indicated that 93% of the trees were grouped in the same gradient. The genetic distance based on Fst confirmed the structure result and indicated a high rate of gene flow among the investigated populations. Based on high gene flow (low differentiation of the population along the same river) and the clearly distinct genetic structure of the investigated gradients, it can be concluded that rivers are the main seed dispersal vector among P. fraxinifolia populations. The genetic diversity of P. fraxinifolia did not show any trend from upstream to downstream. The high level of gene flow and uniform genetic diversity along each river suggest the “classical” metapopulation structure of the species.

  • Yousefzadeh, Department of Environmental Science, Faculty of Natural Resources and Marine Sciences, Tarbiat Modares University, Noor, Mazandaran, Iran E-mail: h.yousefzadeh@modares.ac.ir (email)
  • Rajaei, Department of Forestry, Faculty of Natural Resources and Marine Sciences, Tarbiat Modares University, Noor, Mazandaran, Iran E-mail: r.rajaei@modares.ac.ir
  • Jasińska, Laboratory of Systematics and Geography, Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, PL-62-035 Kornik, Poland E-mail: jasiak9@wp.pl
  • Walas, Laboratory of Systematics and Geography, Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, PL-62-035 Kornik, Poland E-mail: lukaswalas@wp.pl
  • Fragnière, Department of Biology and Botanic Garden, University of Fribourg, Chemin du Musée 10, CH-1700 Fribourg, Switzerland E-mail: yann.fragniere@unifr.ch
  • Kozlowski, Department of Biology and Botanic Garden, University of Fribourg, Chemin du Musée 10, CH-1700 Fribourg, Switzerland; Natural History Museum Fribourg, Chemin du Musée 6, CH-1700 Fribourg, Switzerland E-mail: gregor.kozlowski@unifr.ch
article id 9987, category Research article
Monika Dering, Katarzyna Sękiewicz, Grzegorz Iszkuło, Aleksandra Chojnacka, Dominik Tomaszewski, Emilia Pers-Kamczyc, Piotr Karolewski. (2018). Spatial genetic structure and clonal structure of Prunus serotina during invasive spread. Silva Fennica vol. 52 no. 3 article id 9987. https://doi.org/10.14214/sf.9987
Keywords: genetic structure; invasiveness; black cherry; colonization; clonal structure
Highlights: The spread of Prunus serotina in invaded forests is facilitated by high propagule pressure; The seed shadow overlap prevents strong spatial genetic structure; During colonization of isolated site, a strong spatial genetic structure is produced due to founder effect; Overall clonality in P. serotina was low but may efficiently support seedling bank thus contributing to species invasiveness.
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Prunus serotina Ehrh. (black cherry) is one of the most important invaders in the European forests, but existing studies have given limited insight into demo-genetic factors underpinning the process of species invasion. Fine-scale genetic structure (FSGS) may deliver important knowledge on genetics of invasion contributing to efficient management of the alien species. Using eight microsatellites we investigated FSGS, clonal structure and relatedness in four black cherry populations which represented different stages of the invasive spread into Scots pine forests. Three populations were in a continuous forest complex and represented the colonization (Z_1) and established stages (Z_2 and Z_3). To investigate how colonization ability of the species is modified by landscape features, we analyzed an isolated population at colonization stage located in limited forest patch located in an agricultural landscape (R). Populations from continuous forest showed low yet significant positive FSGS with Sp = 0.0068 in Z_1, 0.0054 in Z_2, and 0.0066 in Z_3, while in R spatial structure was the strongest (0.0145). Considerable relatedness noted in population R suggests a dominance of within-population mating and recruitments, low immigration rate and limited seed dispersal, all of which led to the observed strong FSGS. Also, we presume that a founder effect likely involved during colonization of isolated forest patch R led to strong FSGS. In contrary, the seed shadow overlap in the populations from continuous forest prevented strong FSGS and facilitated colonization. Despite of low level of clonality, we argue that it may efficiently support black cherry seedling bank contributing to species invasiveness.

  • Dering, Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland E-mail: mdering@man.poznan.pl (email)
  • Sękiewicz, Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland E-mail: ksekiewicz@man.poznan.pl
  • Iszkuło, Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland; Faculty of Biological Sciences, University of Zielona Góra, Prof. Z. Szafrana 1, 65-516 Zielona Góra, Poland E-mail: iszkulo@man.poznan.pl
  • Chojnacka, Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland E-mail: jagoda900@gmail.com
  • Tomaszewski, Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland E-mail: dominito@man.poznan.pl
  • Pers-Kamczyc, Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland E-mail: epk@man.poznan.pl
  • Karolewski, Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland E-mail: pkarolew@man.poznan.pl
article id 7738, category Research article
Samuel Egbäck, Bo Karlsson, Karl-Anders Högberg, Kenneth Nyström, Mateusz Liziniewicz, Urban Nilsson. (2018). Effects of phenotypic selection on height-diameter ratio of Norway spruce and Scots pine in Sweden. Silva Fennica vol. 52 no. 2 article id 7738. https://doi.org/10.14214/sf.7738
Keywords: Pinus sylvestris; Picea abies; genetic correlations; heritability; Genetic selection; slenderness
Highlights: Swedish plus-tree selection promoted less slender Norway spruce trees and more slender Scots pine trees compared to neighboring trees; Similar results were also found for progeny trials which indicated that genetics played a prominent role in phenotypic appearance.
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Genetically improved Norway spruce (Picea abies (L.) Karst.) and Scots pine (Pinus sylvestris L.) are extensively used in operational Swedish forestry plantations. However, relatively little is known about the stem slenderness (height-diameter ratio) of genetically improved material. Thus, in this study we investigated effects of plus-tree selection on stem slenderness of Norway spruce and Scots pine in Sweden by evaluating both the plus-tree selection and a large number of progeny trials. Species-specific models for predicting the height-diameter ratio were estimated using regression and mixed model approach. Our results show that phenotypic plus-tree selection promoted less slender Norway spruce trees and more slender Scots pine trees compared to neighboring trees. Similar results were also found for the progeny trials which indicated that genetics played a prominent role in the phenotypic appearance. Compared to the progeny of neighboring trees, Norway spruce plus-tree progenies had a 5.3% lower height-diameter ratio, while Scots pine plus-tree progenies had a 1.5% greater height-diameter ratio. The narrow sense heritability for height-diameter ratio was 0.19 for Norway spruce and 0.11 for Scots pine, indicating that it is possible to modify the height-diameter ratio by breeding. Correlation coefficients between breeding values for height-diameter ratio and diameter were negative for Scots pine (–0.71) and Norway spruce (–0.85), indicating that selection for diameter only would result in less slender stems of both species. Similar correlations were also found between breeding values for height-diameter ratio and height of Scots pine (–0.34) and Norway spruce (–0.74).

  • Egbäck, Swedish University of Agricultural Sciences, Southern Swedish Forest Research Centre, P.O. Box 49, 230 53 Alnarp, Sweden E-mail: samuel.egback@slu.se (email)
  • Karlsson, Skogforsk, Ekebo, 268 90 Svalöv, Sweden E-mail: bo.karlsson@skogforsk.se
  • Högberg, Skogforsk, Ekebo, 268 90 Svalöv, Sweden E-mail: karl-anders.hogberg@skogforsk.se
  • Nyström, Swedish University of Agricultural Sciences, Department of Forest Resource Management, Skogsmarksgränd, 901 83 Umeå, Sweden E-mail: kenneth.nystrom@slu.se
  • Liziniewicz, Skogforsk, Ekebo, 268 90 Svalöv, Sweden E-mail: Mateusz.Liziniewicz@skogforsk.se
  • Nilsson, Swedish University of Agricultural Sciences, Southern Swedish Forest Research Centre, P.O. Box 49, 230 53 Alnarp, Sweden E-mail: urban.nilsson@slu.se
article id 1691, category Research article
Enéas Ricardo Konzen, Raquel Peron, Márcio Akira Ito, Gilvano Ebling Brondani, Siu Mui Tsai. (2017). Molecular identification of bamboo genera and species based on RAPD-RFLP markers. Silva Fennica vol. 51 no. 4 article id 1691. https://doi.org/10.14214/sf.1691
Keywords: molecular markers; molecular screening; restriction enzymes; genetic divergence; Dendrocalamus; Bambusa
Highlights: We investigated the potential of RAPD-RFLP (Random Amplified Polymorphic DNA, Restriction Fragment Length Polymorphism) in detecting genetic relationships among bamboo genera and species; RFLP profiles resolved in acrylamide gels revealed high number of markers, which accurately differentiated species and genera, based on cophenetic correlation coefficients; We recommend RAPD-RFLP for analyses of genetic diversity and divergence among bamboo genera, species and varieties.
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Bamboo species have a very significant ecological and economic impact. Determining morphological and genetic differences among bamboo genera and species are crucial to explore desirable traits for breeding purposes. Several advances have been made in the taxonomy of bamboos by using molecular fingerprinting tools and next generation sequencing technologies. Nevertheless, classical molecular markers such as RAPD (Random Amplified Polymorphic DNA), AFLP (Amplified Fragment Length Polymorphism) and ISSR (Inter Simple Sequence Repeats) also provide an accurate discrimination among genera and species. Moreover, the RAPD-RFLP (Random Amplified Polymorphic DNA, Restriction Fragment Length Polymorphism) method, in which amplification products from RAPD are digested with restriction enzymes, is a reliable, fast and cost-effective method for fingerprinting. RAPD-RFLP has been scarcely used in the literature and no report regarding bamboo taxonomy is available with this method. Here we explored the molecular (RAPD, RAPD-RFLP) variation among genera (Bambusa, Dendrocalamus, Guadua and Phyllostachys) and species of bamboo cultivated in Brazil. Both molecular markers allowed clear distinction among the genera studied. Moreover, high cophenetic correlation values in UPGMA clusters indicated their potential for discriminating bamboo species. The digestion of RAPD products (RFLP) resulted in high number of polymorphic bands and produced very characteristic profiles for each genus with three enzyme combinations (HindIII/HaeIII, HinfI/RsaI, and single digestion with MspI). We recommend RAPD-RFLP as a reproducible and informative method for screening differences among genera, species and varieties of bamboos. Providing a cost-effective and accurate method for species identification and characterization is straightforward for bamboo conservation, management and breeding.

  • Konzen, Cell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture (CENA), University of Sao Paulo (USP), Centenário Av., 303, Piracicaba, SP, P.O. Box 96, Brazil; Forest Sciences, Federal University of Lavras (UFLA), Lavras, MG, P.O. Box 3037, Brazil E-mail: erkonzen@gmail.com (email)
  • Peron, Cell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture (CENA), University of Sao Paulo (USP), Centenário Av., 303, Piracicaba, SP, P.O. Box 96, Brazil E-mail: rperon@purdue.edu
  • Ito, Embrapa Western Agriculture, Brazilian Agricultural Research Corporation (EMBRAPA), BR 163 Rd., km 253, Dourados, MS, P.O. Box 449, Brazil E-mail: marcio.ito@embrapa.br
  • Brondani, Forest Sciences, Federal University of Lavras (UFLA), Lavras, MG, P.O. Box 3037, Brazil E-mail: gebrondani@gmail.com
  • Tsai, Cell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture (CENA), University of Sao Paulo (USP), Centenário Av., 303, Piracicaba, SP, P.O. Box 96, Brazil E-mail: tsai@cena.usp.br
article id 7001, category Research article
Fei-Fei Zhai, Jun-Xiang Liu, Zhen-Jian Li, Jin-Mei Mao, Yong-Qiang Qian, Lei Han, Zhen-Yuan Sun. (2017). Assessing genetic diversity and population structure of Salix viminalis across Ergun and West Liao basin. Silva Fennica vol. 51 no. 3 article id 7001. https://doi.org/10.14214/sf.7001
Keywords: genetic variation; microsatellites; geographic barrier; basket willow; common osier
Highlights: High genetic diversity and moderate population differentiation were detected in twelve Salix viminalis populations; Populations from Ergun basin presented higher genetic diversity than populations from West Liao basin; Populations with short distances presented low differentiation.
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Salix viminalis L. is an important shrub that has potential for use as a bioenergy crop, for phytoremediation of heavy metal contaminated soil and sewage sludge treatment. It is mainly distributed in the northeast of China, but the species has not yet been used a resource here. We examined the genetic diversity and population structure of populations from the Ergun basin and West Liao basin using 20 microsatellite markers. A high level of genetic diversity (Na = 16.45, He = 0.742) was detected for S. viminalis, and populations from the Ergun basin exhibited higher genetic diversity and private alleles numbers than the West Liao basin. The 12 populations could be divided into two clusters by both Bayesian analysis and UPGMA clustering which were consistent with the populations derived from the two basins. Moderate population differentiation (FST = 0.076) was shown in S. viminalis, and AMOVA analysis confirmed that most of the genetic variation (86.13%) was attributed to individual differences within populations, while 11.49% was attributed to differences between basins and 2.38% to differences within each basin. Significant correlations of FST/(1–FST) with log (geographic distance) among 12 populations (r = 0.634, p < 0.00) and 10 populations within the Ergun basin (r = 0.482, p = 0.0002) indicated that geographical distance was the principal factor influencing genetic structure. As most of genetic variation exist within populations, so protection measures should be focused on populations with higher genetic diversity and unique alleles, such as Tuli, Mordaga downstream, Zhadun1 and Genhe.

  • Zhai, State Key Laboratory of Tree Genetics and Breeding; Research Institute of Forestry, Chinese Academy of Forestry; Key Laboratory of Tree Breeding and Cultivation, State Forestry Administration, Haidian District, Beijing, 10091, PR China; School of Architectural and Artistic Design, Henan Polytechnic University, Century Avenue, Jiaozuo, Henan, 454000, PR China E-mail: lkyzff@163.com
  • Liu, State Key Laboratory of Tree Genetics and Breeding; Research Institute of Forestry, Chinese Academy of Forestry; Key Laboratory of Tree Breeding and Cultivation, State Forestry Administration, Haidian District, Beijing, 10091, PR China E-mail: liu-jx295@163.com
  • Li, State Key Laboratory of Tree Genetics and Breeding; Research Institute of Forestry, Chinese Academy of Forestry; Key Laboratory of Tree Breeding and Cultivation, State Forestry Administration, Haidian District, Beijing, 10091, PR China E-mail: zhenjianli@163.com
  • Mao, State Key Laboratory of Tree Genetics and Breeding; Research Institute of Forestry, Chinese Academy of Forestry; Key Laboratory of Tree Breeding and Cultivation, State Forestry Administration, Haidian District, Beijing, 10091, PR China; Research Institute of Economic Forest, Xinjiang Academy of Forestry, Anjunanlu, Urumqi, Xinjiang, PR China E-mail: 350512173@qq.com
  • Qian, State Key Laboratory of Tree Genetics and Breeding; Research Institute of Forestry, Chinese Academy of Forestry; Key Laboratory of Tree Breeding and Cultivation, State Forestry Administration, Haidian District, Beijing, 10091, PR China E-mail: qianyq@caf.ac.cn
  • Han, State Key Laboratory of Tree Genetics and Breeding; Research Institute of Forestry, Chinese Academy of Forestry; Key Laboratory of Tree Breeding and Cultivation, State Forestry Administration, Haidian District, Beijing, 10091, PR China E-mail: hdd@caf.ac.cn
  • Sun, State Key Laboratory of Tree Genetics and Breeding; Research Institute of Forestry, Chinese Academy of Forestry; Key Laboratory of Tree Breeding and Cultivation, State Forestry Administration, Haidian District, Beijing, 10091, PR China E-mail: lkyszy@126.com (email)
article id 5662, category Research article
Samuel Egbäck, Urban Nilsson, Kenneth Nyström, Karl-Anders Högberg, Nils Fahlvik. (2017). Modeling early height growth in trials of genetically improved Norway spruce and Scots pine in southern Sweden. Silva Fennica vol. 51 no. 3 article id 5662. https://doi.org/10.14214/sf.5662
Keywords: Pinus sylvestris; Picea abies; individual tree growth model; genetic component; genetic multiplier; unimproved material; improved material
Highlights: The developed height growth model based on unimproved material predicted the development relatively well for genetically improved Norway spruce; For genetically improved Scots pine, however, the model needed to be modified; By incorporating a genetic component into the Scots pine model, the prediction errors were reduced.
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Genetically improved Norway spruce (Picea abies (L.) Karst.) and Scots pine (Pinus sylvestris L.) are used extensively in operational Swedish forestry plantations to increase production. Depending on the genetic status of the plant material, the current estimated genetic gain in growth is in the range 10–20% for these species and this is expected to increase further in the near future. However, growth models derived solely from data relating to genetically improved material in Sweden are still lacking. In this study we investigated whether an individual tree growth model based on data from unimproved material could be used to predict the height increment in young trials of genetically improved Norway spruce and Scots pine. Data from 11 genetic experiments with large genetic variation, ranging from offspring of plus-trees selected in the late 1940s to highly improved clonal materials selected from well performing provenances were used. The data set included initial heights at the age of 7–15 years and 5-year increments for almost 2000 genetic entries and more than 20 000 trees. The evaluation indicated that the model based on unimproved trees predicted height development relatively well for genetically improved Norway spruce and there was no need to incorporate a genetic component. However, for Scots pine, the model needed to be modified. A genetic component was developed based on the genetic difference recorded within each trial, using mixed linear models and methods from quantitative genetics. By incorporating the genetic component, the prediction errors were significantly reduced for Scots pine. This study provides the first step to incorporate genetic gains into Swedish growth models and forest management planning systems.

  • Egbäck, Swedish University of Agricultural Sciences, Southern Swedish Forest Research Centre, P.O. Box 49, 230 53 Alnarp, Sweden E-mail: samuel.egback@slu.se (email)
  • Nilsson, Swedish University of Agricultural Sciences, Southern Swedish Forest Research Centre, P.O. Box 49, 230 53 Alnarp, Sweden E-mail: urban.nilsson@slu.se
  • Nyström, Swedish University of Agricultural Sciences, Department of Forest Resource Management, Skogsmarksgränd, 901 83 Umeå, Sweden E-mail: kenneth.nystrom@slu.se
  • Högberg, Skogforsk, Ekebo, 268 90 Svalöv, Sweden E-mail: karl-anders.hogberg@skogforsk.se
  • Fahlvik, Swedish University of Agricultural Sciences, Southern Swedish Forest Research Centre, P.O. Box 49, 230 53 Alnarp, Sweden E-mail: nils.fahlvik@slu.se
article id 1743, category Research article
Gintare Sabalinkiene, Darius Danusevicius, Michael Manton, Gediminas Brazaitis, Kastytis Simkevicius. (2017). Differentiation of European roe deer populations and ecotypes in Lithuania based on DNA markers, cranium and antler morphometry. Silva Fennica vol. 51 no. 3 article id 1743. https://doi.org/10.14214/sf.1743
Keywords: genetic structure; inbreeding; Capreolus capreolus; polymorphism; wild game management
Highlights: Lithuanian roe deer populations are genetically structured into southern and northern groups, most likely affected by a divergent gene flow and Lithuania’s largest rivers slowing down migration; Microsatellite and skull morphology based genetic differentiation between field and forest ecotypes are weak; Geographical location has a significant effect on antler morphometry traits and skull size of male roe deer, the latter increasing northwards.
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The objective of our study was to assess the genetic and morphological differentiation of European roe deer (Capreolus capreolus L.) in Lithuania based on DNA markers, skull and anther morphology. DNA was extracted from 79 culled individuals at 13 locations and genotyped at five nuclear microsatellite loci. Based on culling location, individuals were assigned to either a field (N = 43) or a forest ecotype (N = 36). Skull and antler morphometry was studied on 603 and 292 individuals, respectively. Results showed no significant genetic and skull morphology differentiation between the ecotypes. The forest ecotype tends to exhibit lower genetic diversity compared to the field ecotype, particularly for male individuals. The genetic differentiation of roe deer in Lithuania was significant based on the RST values, but not on the FST values. A STRUCTURE analyses revealed southern and northern genetic clusters, most likely affected by divergent gene flow. The country’s major rivers Nemunas and Neris are likely to increase differentiation between the clusters. ANOVA on skull morphology by gender and age indicated a significant effect of geographical location. Skull size (especially length) is greater in the northern part of the country. We also found significant effects of age, ecotype and geographical location on most of the roe deer male antler morphometric traits.

  • Sabalinkiene, Institute of Forest Biology and Silviculture, Faculty of Forest Sciences and Ecology, Aleksandras Stulginskis University, Studentu street 11, Akademija, Kaunas district, Lithuania E-mail: gintare.sabalinkiene@asu.lt (email)
  • Danusevicius, Institute of Forest Biology and Silviculture, Faculty of Forest Sciences and Ecology, Aleksandras Stulginskis University, Studentu street 11, Akademija, Kaunas district, Lithuania E-mail: darius.danusevicius@asu.lt
  • Manton, Institute of Forest Biology and Silviculture, Faculty of Forest Sciences and Ecology, Aleksandras Stulginskis University, Studentu street 11, Akademija, Kaunas district, Lithuania E-mail: michael.manton@asu.lt
  • Brazaitis, Institute of Forest Biology and Silviculture, Faculty of Forest Sciences and Ecology, Aleksandras Stulginskis University, Studentu street 11, Akademija, Kaunas district, Lithuania E-mail: gediminas.brazaitis@asu.lt
  • Simkevicius, Institute of Forest Biology and Silviculture, Faculty of Forest Sciences and Ecology, Aleksandras Stulginskis University, Studentu street 11, Akademija, Kaunas district, Lithuania E-mail: kastytis.simkevicius@asu.lt
article id 1721, category Research article
Anna Hebda, Błażej Wójkiewicz, Witold Wachowiak. (2017). Genetic characteristics of Scots pine in Poland and reference populations based on nuclear and chloroplast microsatellite markers. Silva Fennica vol. 51 no. 2 article id 1721. https://doi.org/10.14214/sf.1721
Keywords: Pinus sylvestris; phylogeography; conifers; genetic divergence; population structure; microsatellite markers; neutral variation
Highlights: Similar genetic variation was found between Polish Scots pine populations from a wide variety of habitats based on nSSR and cpSSR markers; Homogeneity was observed in the genetic structures of Polish and Finnish populations from the continuous pine range; Genetic differentiation in microsatellite markers was identified only when populations from the central pine distribution were compared to the marginal stands.
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Polymorphisms at a set of eighteen nuclear (nSSR) and chloroplast (cpSSR) microsatellite loci were investigated in sixteen populations of Scots pine (Pinus sylvestris L.) derived from the provenance trial experiment and representative of the species distribution range and climatic zones in Poland. The patterns of genetic variation were compared to the reference samples from the species distribution in Europe and Asia. A similar level of genetic variation and no evidence of population structure was found among the Polish stands. They showed genetic similarity and homogenous patterns of allelic frequency spectra compared to the Northern European populations. Those populations were genetically divergent compared to the marginal populations from Turkey, Spain and Scotland. The population structure patterns reflect the phylogeography of the species and the divergence of populations that most likely do not share recent history. As the analysed provenance trial populations from Poland are diverged in phenotypic traits but are genetically similar, they could be used to test for selection at genomic regions that influence variation in quantitative traits.

  • Hebda, University of Agriculture in Krakow, Faculty of Forestry, Institute of Forest Ecology and Silviculture, Department of Genetics and Forest Tree Breeding, 29 Listopada 46, 31-425 Kraków, Poland ORCID http://orcid.org/0000-0002-3149-8644 E-mail: ana.hebda@gmail.com (email)
  • Wójkiewicz, Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland E-mail: bwojkiew@man.poznan.pl
  • Wachowiak, Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland; Institute of Environmental Biology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznań, Poland E-mail: witoldw@man.poznan.pl
article id 1678, category Research article
Juan F. Jimenez, Pedro Sánchez-Gómez, Jose Luis Cánovas, Isabell Hensen, Miloud Aouissat. (2017). Influence of natural habitat fragmentation on the genetic structure of Canarian populations of Juniperus turbinata. Silva Fennica vol. 51 no. 2 article id 1678. https://doi.org/10.14214/sf.1678
Keywords: genetic diversity; AFLP markers; Canarian juniper; oceanic islands
Highlights: Canarian populations of Juniperus turbinata exhibited levels of genetic diversity similar to those of mainland populations; Despite the historical geologic events occurred in Canary Islands, and the documented decrease of populations since the arrival of settlers, no genetic differentiation between islands has been observed; As it has been observed for other Macaronesian endemics, J. turbinata long dispersal ability seems to be the main force driving the genetic structure of populations.
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Oceanic archipelagos provide an important platform from which to evaluate the effects of isolation and fragmentation on the genetic structure of species. As a result of oceanic isolation, such species usually show lower levels of genetic diversity and higher genetic differentiation than their mainland congeners. However, this is not necessarily the case for long distance dispersal species, whose genetic structure is not strictly defined by population isolation. We assessed the level and distribution of genetic diversity among Canarian populations of Juniperus turbinata in order to evaluate the influence of population isolation on its genetic structure. Using Amplified Fragment Length Polymorphism markers, we analyzed molecular diversity among 175 individuals from five populations occurring across the Canary Island and three Moroccan populations. Principal Coordinate Analysis, neighbor joining clustering, AMOVA and Bayesian-based analysis were applied to examine population structure. Despite the documented habitat loss and decline in Canarian populations, Amplified Fragment Length Polymorphism markers revealed levels of intra-population genetic diversity that were similar to those from mainland populations, and low levels of genetic differentiation. Bayesian analysis of population structure showed three main clusters, one comprising El Hierro population and a few individuals from several islands, a second cluster that grouped the remaining Canarian populations together, and a third cluster grouping Moroccan populations. Our results suggest that the main force driving the genetic structure of Canarian populations of J. turbinata is its capacity for long distance dispersal.

  • Jimenez, Departamento de Biología Vegetal (Botánica), Universidad de Murcia, Campus de Espinardo s/n, E-30100 Murcia, Spain E-mail: fjimenez@um.es (email)
  • Sánchez-Gómez, Departamento de Biología Vegetal (Botánica), Universidad de Murcia, Campus de Espinardo s/n, E-30100 Murcia, Spain ORCID http://orcid.org/0000-0001-6754-1512 E-mail: psgomez@um.es
  • Cánovas, Departamento de Biología Vegetal (Botánica), Universidad de Murcia, Campus de Espinardo s/n, E-30100 Murcia, Spain E-mail: joseluis.canovas@um.es
  • Hensen,  Institut für Biologie, Martin-Luther Universitat, 06099 Halle, Germany E-mail: isabell.hensen@botanik.uni-halle.de
  • Aouissat, Centre Universitaire Salhi Ahmed Naama, BP 66, Naâma, Algérie E-mail: aouissatm@yahoo.fr
article id 1566, category Research article
Valdir Marcos Stefenon, Jordana Caroline Nagel, Igor Poletto. (2016). Evidences of genetic bottleneck and fitness decline in Luehea divaricata populations from southern Brazil. Silva Fennica vol. 50 no. 5 article id 1566. https://doi.org/10.14214/sf.1566
Keywords: demographic history; effective population size; genetic resources conservation; Pampa biome
Highlights: Signatures of genetic bottlenecks and reduction of populations’ fitness were observed in populations of Luehea divaricata in southern Brazil; Lower levels of observed heterozygosity are correlated with populations’ fitness, decreasing germination capacity and increasing the proportion of anomalous germinated plantlets; Promoting the connection among populations is proposed as a key strategy towards conservation of L. divaricata genetic resources in its southernmost distribution range.
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Extant populations growing in regions that were refugia during the last glacial period are expected to show higher genetic diversity than populations that moved from these refugia into new areas in higher latitudes. Such new populations likely faced harsher climatic conditions, being established with reduced population size and experiencing the effects of genetic bottlenecks. In this study we employed data from nuclear SSR markers for detecting molecular signatures of genetic bottlenecks, and germination experiments to evaluate reduction of populations’ fitness in natural populations of Luehea divaricata Mart. et Zucc., growing in the southern range of the species distribution (around 30°S latitude). Signatures of genetic bottlenecks and reduction of populations’ fitness were observed in all populations. Lower levels of observed heterozygosity are correlated with populations’ fitness, decreasing germination capacity and increasing the proportion of anomalous germinated plantlets. Promoting the connection among populations is proposed as a key strategy towards conservation of L. divaricata genetic resources in its southernmost distribution range. The offspring from crosses among populations would significantly increase the observed heterozygosity and fitness of multiple populations.

  • Stefenon, Nucleus of Genomics and Molecular Ecology, Interdisciplinary Center of Biotechnological Research, Universidade Federal do Pampa, BR290 km, 97300-000, São Gabriel, RS, Brazil E-mail: valdirstefenon@unipampa.edu.br (email)
  • Nagel, Nucleus of Genomics and Molecular Ecology, Interdisciplinary Center of Biotechnological Research, Universidade Federal do Pampa, BR290 km, 97300-000, São Gabriel, RS, Brazil E-mail: jordana.nagel@yahoo.com.br
  • Poletto, Laboratory of Plant Protection, Universidade Federal do Pampa, BR290 km, 97300-000, São Gabriel, RS, Brazil E-mail: igorpoletto@unipampa.edu.br
article id 1682, category Research article
Jiří Korecký, Yousry A. El-Kassaby. (2016). Pollination dynamics variation in a Douglas-fir seed orchard as revealed by microsatellite analysis. Silva Fennica vol. 50 no. 4 article id 1682. https://doi.org/10.14214/sf.1682
Keywords: selfing; Pseudotsuga menziesii (Mirb.) Franco; genetic quality; pedigree reconstruction; gametic contribution; pollen contamination
Highlights: Important characteristics such as parental reproductive success, pollen contamination, and selfing rate in the second generation Douglas-fir seed orchard have been estimated; Since this research is a part of a multi-year study, outputs were compared to those from two other years; Results are in line and differences in pollination dynamics across years are attributable to the various crop management practices.
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As part of a multi-year monitoring study of pollination dynamics in a second generation Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) seed orchard, we estimated with the aid of eight microsatellite markers three important reproductive biology characteristics affecting the genetic worth and diversity of seed crops; namely parental reproductive success, pollen contamination, and selfing rate. The obtained results were compared to those from two previous years to gauge appropriate seed crop management practices and ultimately allow approximate generalization of seed crop genetic quality. We determined that 80% of parental gametes were produced by 52% of the parents, 13% of paternal gametes resulted from pollen contamination (i.e., gene flow), and 12% of the seed were the product of selfing. The obtained results were in line with those observed for 2005 and 2009 where 80% of gametes being produced by 37–48% of the parents, 10–18% pollen contamination, and 15–17% selfing rate. The observed reproductive biology parameters differences are attributable to the various crop management practices implemented (i.e., bloom delay and supplemental-mass-pollination) across years and calls for justification due to the observed minimal differences on seed crops genetic quality.

  • Korecký, Department of Genetics and Physiology of Forest Trees, Faculty of Forestry and Wood Sciences, Czech University of Life Sciences Prague, Praha 6, 165 21, Czech Republic ORCID http://orcid.org/0000-0001-7859-1750 E-mail: korecky@fld.czu.cz (email)
  • El-Kassaby, Department of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada ORCID http://orcid.org/0000-0002-4887-8977 E-mail: y.el-kassaby@ubc.ca
article id 1516, category Research article
Hamed Yousefzadeh, Abasalt Hosseinzadeh Colagar, Fatemeh Fallah. (2016). Genetic diversity of geographically isolated Iranian populations of Betula pendula Roth: implications for conservation. Silva Fennica vol. 50 no. 3 article id 1516. https://doi.org/10.14214/sf.1516
Keywords: genetic differentiation; habitat isolation; haplotype diversity; genetic drift; long-term isolation
Highlights: The Iranian populations of birches exhibited high levels of genetic diversity, population differentiation, and the presence of unique haplotypes; The high genetic differentiation amongst the populations may contribute to the local geographical structure and poor gene flow amongst individuals; The results can potentially be used to adopt appropriate strategies for the conservation and management of isolated tree populations.
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The effects of long-term habitat fragmentations on genetic and population differentiation of Betula pendula Roth were investigated using chloroplast DNA (cpDNA) variations. Leaf samples were collected from four small remnant populations across the north of Iran. Three pairs of universal primers were used to amplify cpDNA, large single copy regions of trnC-trnD, trnK1-trnK2 and trnD-trnT. A total of 18 of the cpDNA haplotypes in the four populations were identified, however, no clear phylogeographic structuring of haplotypes could be detected. The total genetic diversity (HT) for all populations was high (0.932). Average intra-population genetic diversity was estimated as HS = 0.729 and average differentiation of populations GST = 0.218. Mantel tests of isolation by distance revealed a significant relationship between Wright’s inbreeding coefficient (Fst) and geographical distances for the four populations in Iran (r = 0.77, p < 0.05). The results of the hierarchical analysis of molecular variance (AMOVA) indicated that a 66% variation was partitioned within populations, whilst the variance amongst the four populations was only 34%. We suggest that significant genetic differentiation amongst populations can likely be attributed to reduced gene flow as a result of habitat fragmentation.

  • Yousefzadeh, Department of Forestry, Faculty of Natural Resources, Tarbiat Modares University, Nour, Mazandaran, Iran E-mail: h.yousefzadeh@modares.ac.ir (email)
  • Hosseinzadeh Colagar, Department of Molecular and Cell Biology; Faculty of Basic Sciences, University of Mazandaran, 47416-95447 Babolsar, Iran E-mail: ahcolagar@umz.ac.ir
  • Fallah, Department of Molecular and Cell Biology; Faculty of Basic Sciences, University of Mazandaran, 47416-95447 Babolsar, Iran E-mail: fatemehfalah69@yahoo.com
article id 1510, category Research article
Tähti Pohjanmies, Sakina Elshibli, Pertti Pulkkinen, Mari Rusanen, Pekka Vakkari, Helena Korpelainen, Tomas Roslin. (2016). Fragmentation-related patterns of genetic differentiation in pedunculate oak (Quercus robur) at two hierarchical scales. Silva Fennica vol. 50 no. 2 article id 1510. https://doi.org/10.14214/sf.1510
Keywords: marginal populations; Finland; genetic diversity; microsatellites
Highlights: While long-lived, widespread tree species should be resistant to genetic impoverishment, we detected high differentiation among populations and pronounced genetic structure within populations of Quercus robur in Finland; These patterns seem indicative of population processes active at range margins, and of disequilibrium following historic habitat change; Preservation of remaining genetic variation is thus important in the conservation of Q. robur.
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Populations at species’ range margins are expected to show lower genetic diversity than populations at the core of the range. Yet, long-lived, widespread tree species are expected to be resistant to genetic impoverishment, thus showing comparatively high genetic diversity within populations and low differentiation among populations. Here, we study the distribution of genetic variation in the pedunculate oak (Quercus robur L.) at its range margin in Finland at two hierarchical scales using 15 microsatellite loci. At a regional scale, we compared variation within versus among three oak populations. At a landscape scale, we examined genetic structuring within one of these populations, growing on an island of ca 5 km2. As expected, we found the majority of genetic variation in Q. robur to occur within populations. Nonetheless, differentiation among populations was markedly high (FST = 0.12) compared with values reported for populations of Q. robur closer to the core of its range. At the landscape level, some spatial and temporal sub-structuring was observed, likely explained by the history of land-use on the island. Overall, Q. robur fulfils the expectation of the central-marginal hypothesis of high differentiation among marginal populations, but the notable population differentiation has most likely been influenced also by the long, ongoing fragmentation of populations. Finnish oak populations may still be adjusting to the drastic habitat changes of the past centuries. Preservation of genetic variation within the remaining stands is thus an important factor in the conservation of Q. robur at its range margin.

  • Pohjanmies, University of Helsinki, Department of Agricultural Sciences, Spatial Foodweb Ecology Group, P.O. Box 27, FI-00014 University of Helsinki, Finland; University of Jyväskylä, Department of Biological and Environmental Sciences, P.O. Box 35, FI-40014 University of Jyväskylä, Finland E-mail: tahti.t.pohjanmies@jyu.fi (email)
  • Elshibli, Natural Resources Institute Finland (Luke), Green technology, P.O. Box 18, FI-01301 Vantaa, Finland; University of Helsinki, Department of Agricultural Sciences, P.O. Box 27, FI-00014 University of Helsinki, Finland E-mail: sakina.elshibli@helsinki.fi
  • Pulkkinen, Natural Resources Institute Finland (Luke), Green technology, Haapastensyrjäntie 34, FI-12600 Läyliäinen, Finland E-mail: pertti.pulkkinen@luke.fi
  • Rusanen, Natural Resources Institute Finland (Luke), Green technology, P.O. Box 18, FI-01301 Vantaa, Finland E-mail: mari.rusanen@luke.fi
  • Vakkari, Natural Resources Institute Finland (Luke), Green technology, P.O. Box 18, FI-01301 Vantaa, Finland E-mail: pekka.vakkari@luke.fi
  • Korpelainen, University of Helsinki, Department of Agricultural Sciences, P.O. Box 27, FI-00014 University of Helsinki, Finland E-mail: helena.korpelainen@helsinki.fi
  • Roslin, University of Helsinki, Department of Agricultural Sciences, Spatial Foodweb Ecology Group, P.O. Box 27, FI-00014 University of Helsinki, Finland; Swedish University of Agricultural Sciences, Department of Ecology, P.O. Box 7044, SE-750 07 Uppsala, Sweden E-mail: tomas.roslin@helsinki.fi
article id 1283, category Research article
Ivana Bjedov, Dragica Obratov–Petković, Danijela Mišić, Branislav Šiler, Jelena M Aleksic. (2015). Genetic patterns in range-edge populations of Vaccinium species from the central Balkans: implications on conservation prospects and sustainable usage. Silva Fennica vol. 49 no. 4 article id 1283. https://doi.org/10.14214/sf.1283
Keywords: marginal populations; genetic structure; Vaccinium sp.; the Balkans; RAPD markers; genetic profiles; interspecific hybridization
Highlights: We studied fragmentary distributed range-edge populations of Vaccinium myrtillus, Vaccinium uliginosum and Vaccinium vitis-idaea from the Balkans using RAPDs; Low genetic diversities and high genetic differentiation were found in all species; The prevalence of clonal individuals was not observed; Past interspecific hybridization among V. vitis-idaea and the other two species was detected; Guidelines for conservation and sustainable usage were provided.
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Vaccinium myrtillus L., Vaccinium uliginosum L. and Vaccinium vitis-idaea L. are perennial, cold-adapted clonal shrubs distributed throughout Europe, northern Asia and North America. Due to their usage in food (berries) and pharmaceutical industry (berries and leaves), their natural populations are exposed to anthropogenic and other impacts that affect their genetic make-up. We analyzed 14 fragmentary distributed and small-sized peripheral populations of these species from the Balkans, which represents the southeastern-European marginal area of their wide European distributions, using RAPD molecular markers. The contemporary genetic patterns in all three species within the Balkans were generally similar, and in comparison to previous reports on populations of these species found in northward Europe, where they have a more continuous distribution, the levels of genetic diversity were more or less halved, genetic differentiation was several times higher, gene flow exceptionally low, and the expected prevalence of clonal individuals was lacking. The population dynamics of all three species within the Balkans was complex and distinct, and was characterized by a past admixture of individuals from discrete populations of the same species and interspecific hybridisation not only between V. myrtillus and V. vitis-idaea but also between V. uliginosum and V. vitis-idaea, the latter not being reported to date. Conservation measures suitable for preservation of presumably genetically distinct portions of the Balkans’ gene pools of studied species have been suggested, while the utility of interspecific hybrids in breeding programs and/ or in food/pharmaceutical industry is yet to be assessed. 

  • Bjedov, University of Belgrade, Faculty of Forestry, Kneza Višeslava 1, 11000 Belgrade, Serbia E-mail: ivana.bjedov@sfb.bg.ac.rs
  • Obratov–Petković, University of Belgrade, Faculty of Forestry, Kneza Višeslava 1, 11000 Belgrade, Serbia E-mail: dragica.obratov-petkovic@sfb.bg.ac.rs
  • Mišić, University of Belgrade, Institute for Biological Research “Siniša Stanković”, Boulevard Despota Stefana 142, 11000 Belgrade, Serbia E-mail: dmisic@ibiss.bg.ac.rs
  • Šiler, University of Belgrade, Institute for Biological Research “Siniša Stanković”, Boulevard Despota Stefana 142, 11000 Belgrade, Serbia E-mail: branislav.siler@ibiss.bg.ac.rs
  • Aleksic, University of Belgrade, Institute of Molecular Genetics and Genetic Engineering, Vojvode Stepe 444a, P.O. Box 23, 11010 Belgrade, Serbia E-mail: aleksic_jelena@yahoo.com.au (email)
article id 1236, category Research article
Monika Litkowiec, Beata P. Plitta-Michalak, Andrzej Lewandowski, Grzegorz Iszkuło. (2015). Homogenous genetic structure in populations of Taxus baccata with varied proportions of male and female individuals. Silva Fennica vol. 49 no. 4 article id 1236. https://doi.org/10.14214/sf.1236
Keywords: genetic diversity; dioecy; English yew; Poland; sex ratio; nSSR markers
Highlights: Polish populations of Taxus baccata showed a high level of genetic diversity within populations and moderate genetic differentiation between them after nSSR marker testing; No significant differences in the genetic variation between T. baccata male and female individuals were observed, and microsatellite loci neutrality was verified; Determining the sex ratio in T. baccata populations is not essential to develop a clear understanding of genetic differentiation and diversity within and between populations of this species.
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English yew (Taxus baccata L.) is a strictly outcrossing and dioecious species whose populations are small and isolated. It is known that sex ratios may vary in natural populations due to local environmental conditions or stochastic events. However, unbalanced sex ratios may have negative impacts on genetic diversity through enhanced genetic drift and inbreeding. The present study represents one of the first attempts to compare the genetic variation at microsatellite loci within and between populations with different gender proportions. Our results indicated that there were no significant correlations between sex ratio and the extent of genetic variation in different populations. All populations exhibited high levels of genetic diversity. Additionally, the genetic structure was characterized separately in male and female individuals. Statistical analyses of the set estimators describing the genetic structure of male and female individuals of T. baccata revealed no significant differences between the two groups. Molecular analysis verified that microsatellite nuclear loci neutrality developed for T. baccata, as there were no significant differences in the genetic variation between males and females and no evidence for any outlier loci using coalescent and hierarchical Bayesian simulations. The results demonstrate that ignoring biased sex ratios in T. baccata populations had no effect on the assessment of genetic differentiation and genetic diversity within and between populations of this species. These results are discussed with regards to the practical application of molecular markers in conservation programs.

  • Litkowiec, Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland E-mail: mlit@man.poznan.pl (email)
  • Plitta-Michalak, Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland E-mail: beata-plitta@wp.pl
  • Lewandowski, Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland E-mail: alew@man.poznan.pl
  • Iszkuło, Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland & University of Zielona Góra, Faculty of Biological Sciences, Prof. Z. Szafrana 1, 65-516 Zielona Góra, Poland E-mail: iszkulo@man.poznan.pl
article id 1073, category Research article
Pedro Sánchez-Gómez, Juan F. Jiménez, Juan B. Vera, Francisco J. Sánchez-Saorín, Juan F. Martínez, Joseph Buhagiar. (2013). Genetic structure of Tetraclinis articulata, an endangered conifer of the western Mediterranean basin. Silva Fennica vol. 47 no. 5 article id 1073. https://doi.org/10.14214/sf.1073
Keywords: conservation; genetic differentiation; genetic diversity; ISSR markers
Highlights: The employment of ISSR molecular markers has shown moderate genetic diversity and high genetic differentiation in Tetraclinis articulata; Genetic structure of populations seems to be influenced by the anthropogenic use of this species since historical times, or alternatively, by the complex palaeogeographic history of the Mediterranean basin; Results could be used to propose management policies for conservation of populations.
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Tetraclinis articulata (Vahl) Masters is a tree distributed throughout the western Mediterranean basin. It is included in the IUCN (International Union for Conservation of Nature) red list, and protected by law in several of the countries where it grows. In this study we examined the genetic diversity and genetic structure of 14 populations of T. articulata in its whole geographic range using ISSR (inter simple sequence repeat) markers. T. articulata showed moderate genetic diversity at intrapopulation level and high genetic differentiation. The distribution of genetic diversity among populations did not exhibit a linear pattern related to geographic distances, since all analyses (principal coordinate analysis, Unweighted pair group method with arithmetic mean dendrogram and Bayesian structure analysis) revealed that spanish population grouped with Malta and Tunisia populations. Although it is possible that T. articulata earlier was natural in Southeast Spain, results suggest that the current population has been reintroduced into the Iberian Peninsula in historical times, due to its utility in mining and building. In addition, results could be used to propose management guidelines for the conservation of T. articulata.
  • Sánchez-Gómez, Departamento de Biología Vegetal (Botánica), Universidad de Murcia, Campus de Espinardo s/n, E-30100 Murcia, Spain E-mail: psgomez@um.es
  • Jiménez, Departamento de Biología Vegetal (Botánica), Universidad de Murcia, Campus de Espinardo s/n, E-30100 Murcia, Spain E-mail: fjimenez@um.es (email)
  • Vera, Departamento de Biología Vegetal (Botánica), Universidad de Murcia, Campus de Espinardo s/n, E-30100 Murcia, Spain E-mail: jbveraperez@gmail.com
  • Sánchez-Saorín, Dirección General de Medio Ambiente, Consejería de Presidencia de la Región de Murcia, C/ Catedrático Eugenio Úbeda nº3, E-30071 Murcia, Spain E-mail: fjavier.sanchez3@carm.es
  • Martínez, Dirección General de Medio Ambiente, Consejería de Presidencia de la Región de Murcia, C/ Catedrático Eugenio Úbeda nº3, E-30071 Murcia, Spain E-mail: juanf.martinez@carm.es
  • Buhagiar, Argotti Herbarium and Gardens (UOM), Triq Vincenzo Bugeja Floriana VLT 16, Malta E-mail: joseph.buhagiar@um.edu.mt
article id 928, category Research article
Rune Simonsen. (2013). Optimal regeneration method – Planting vs. natural regeneration of Scots pine in northern Sweden. Silva Fennica vol. 47 no. 2 article id 928. https://doi.org/10.14214/sf.928
Keywords: optimisation; silviculture; genetically improved planting material
Highlights: Two regeneration methods were modelled on stand level and optimised numerically to maximise present value for a range of site indexes and locations; Natural regeneration was optimal in most cases; Planting was optimal for high site indexes, low rate of seedling mortality and for low discount rates; Using genetically improved plant material greatly shifts the preference towards planting
Abstract | Full text in HTML | Full text in PDF | Author Info
In this study the profitability of regenerating Scots pine (Pinus sylvestris L.) was examined for two methods; planting and natural regeneration with seed trees. The methods were modelled on stand level and optimised numerically using nonlinear optimisation. The analysis includes 7 site indexes, 16 to 28 expressed as dominant height in meters at an age of 100 years; and 8 localities in northern Sweden distributed on two latitudes, 60°N and 64°N and four altitudes, 100 to 400 m.a.s.l. Furthermore, two scenarios of genetically improved planting material were examined. The results show that the optimal choice of regeneration method depends on the location, site index and discount rate. Considering the same genetic regeneration material, natural regeneration was the optimal method for most of the evaluated sites. Planting was optimal only for stands of high site index and low rate of seedling mortality, which is associated with localities on low altitudes. The break even site index, where the two methods yielded the same net present value, was 27 on average (25 to 28). The choice between the two regeneration methods was found to be more economically important when the discount rate was low and for low site indexes. The option of using genetically improved plant material shift the preference towards planting. Thus, the two levels of genetic gain of +4% and +10% to maximum mean annual increment resulted in an average break even site index of 25 and 21 respectively.
  • Simonsen, Department of Forest Economics, SLU, SE-901 83 Umeå, Sweden E-mail: rune.simonsen@slu.se (email)
article id 905, category Research article
Katarzyna A. Jadwiszczak, Danuta Drzymulska, Agata Banaszek, Piotr Jadwiszczak. (2012). Population history, genetic variation and conservation status of the endangered birch species Betula nana L. in Poland. Silva Fennica vol. 46 no. 4 article id 905. https://doi.org/10.14214/sf.905
Keywords: Betula nana; genetic diversity; microsatellites; conservation genetics; cpDNA; isolation
Abstract | View details | Full text in PDF | Author Info
The effective conservation of species requires data on the levels and distribution of genetic diversity within and among populations. In this study, we estimated the genetic variation in three isolated populations of Betula nana in Poland. An analysis of 11 nuclear microsatellites revealed moderate mean heterozygosities (HO=0.556, HE=0.562), low mean number of alleles per locus (A=4.57) and no inbreeding in the total sample. An M-ratio test indicated that each population had experienced a severe bottleneck in the past. Tests for heterozygosity excess revealed that a significant decrease in the numbers of individuals in two populations had occurred quite recently. The large number of private alleles and very restricted number of migrants between populations (Nm=0.35) strongly suggest that genetic drift and geographic isolation are the primary factors responsible for the reduction of genetic variation in the Polish populations of B. nana. We detected two cpDNA haplotypes in the study populations, which can be explained in terms of either the genetic drift acting on the relict localities or a postglacial recolonisation from distinct refugia. Palynological data indicated that one refugium could be located in the Carpathians and their northern foreland. The primary threat to B. nana in Poland is the overgrowth of its habitats by competing species, which has likely resulted in a lack of generative reproduction in the mountain populations.
  • Jadwiszczak, Institute of Biology, University of Białystok, wierkowa 20B, 15-950 Białystok, Poland E-mail: kszalaj@uwb.edu.pl (email)
  • Drzymulska, Institute of Biology, University of Białystok, wierkowa 20B, 15-950 Białystok, Poland E-mail: dd@nn.pl
  • Banaszek, Institute of Biology, University of Białystok, wierkowa 20B, 15-950 Białystok, Poland E-mail: ab@nn.pl
  • Jadwiszczak, Institute of Biology, University of Białystok, wierkowa 20B, 15-950 Białystok, Poland E-mail: pj@nn.pl
article id 94, category Research article
Youhong Peng, Ke Chen. (2011). Phylogeographic pattern of Populus cathayana in the southeast of Qinghai-Tibetan Plateau of China revealed by cpSSR markers. Silva Fennica vol. 45 no. 4 article id 94. https://doi.org/10.14214/sf.94
Keywords: genetic differentiation; refugia; phylogeography
Abstract | View details | Full text in PDF | Author Info
The vegetation in the Qinghai-Tibetan Plateau is thought to be highly sensitive and more vulnerable to global climate change than that of other areas. The uplift of the plateau as well as the climatic oscillations during glacial periods had a profound impact on plant species distribution and genetic diversity there. In the present study, seven pairs of cpSSR (chloroplast Simple Sequence Repeat) primers were utilized to detect genetic varieties of Populus cathayana Rehd populations from their natural range in the southeastern areas of Qinghai-Tibetan Plateau. A total of 28 alleles and 12 different haplotypes were detected. The proportion of haplotype variation among populations (GST = 0.794, NST = 0.900) indicated high level of genetic differentiation among populations and a significant phylogeographic structure (NST > GST, P < 0.05). This appears to support the hypothesis that these populations were derived from multiple refugia areas during the Quaternary climatic oscillations. Based on the haplotype network and mismatch distribution analyses, we found no evidence of postglacial range recolonization and expansion by P. cathayana in this region. This might be mainly due to the complex topography of the southeastern part of the Qinghai-Tibetan Plateau. The lofty mountain ranges and deep valleys in this region might have prevented long-distance migrations of this species during the climatic amelioration.
  • Peng, Chinese Academy of Sciences, Chengdu Institute of Biology, Chengdu, China E-mail: pengyh@cib.ac.cn (email)
  • Chen, Chinese Academy of Sciences, Chengdu Institute of Biology, Chengdu, China E-mail: kc@nn.cn
article id 152, category Research article
Torgny Persson, Bengt Andersson, Tore Ericsson. (2010). Relationship between autumn cold hardiness and field performance in northern Pinus sylvestris. Silva Fennica vol. 44 no. 2 article id 152. https://doi.org/10.14214/sf.152
Keywords: Scots pine; cold hardiness; genetic coefficient of variation; genetic correlation; multivariate analysis; narrow-sense heritability
Abstract | View details | Full text in PDF | Author Info
Results from 3 artificial freezing tests (one-year-old seedlings) and 15 field trials (9- to 21-year old trees) of half-sib offspring from first generation Scots pine (Pinus sylvestris L.) plus-trees were used to estimate the amount of additive genetic variance for autumn cold hardiness and traits assessed in the field, and the genetic correlations between them. Cold hardiness of individual seedlings was scored visually, based on the discoloration of their needles after freezing in a climate chamber. The field traits analyzed were tree vitality, tree height, spike knot frequency, branch diameter, branch angle, stem straightness, and susceptibility to infection by the pathogenic fungi Phacidium infestans L., Gremmeniella abietina (Lagerb.) Morelet, Melampsora pinitorqua (Braun) Rostr. and Lophodermella sulcigena (Rostr.) Höhn. Narrow sense individual heritabilities varied between 0.30 and 0.54 for autumn cold hardiness, 0 and 0.18 for tree vitality, 0.07 and 0.41 for tree height, and 0.01 and 0.26 for the remaining traits. Based on the results of the artificial freeze tests, our estimates of additive genetic correlations indicate that while early selection for cold hardiness can improve seedling survival rates in the field, it may also reduce growth in mild environments. It also has minor effects on quality traits and attack by common fungal diseases. The results indicate that artificial freeze testing is an appropriate method for identifying suitable clones for establishing seed orchards to supply stock for the reforestation of regions with harsh environments.
  • Persson, Forestry Research Institute of Sweden, Sävar, Sweden E-mail: torgny.persson@skogforsk.se (email)
  • Andersson, Forestry Research Institute of Sweden, Sävar, Sweden E-mail: ba@nn.se
  • Ericsson, Forestry Research Institute of Sweden, Sävar, Sweden E-mail: te@nn.se
article id 169, category Research article
Susanne von Bargen, Elise Grubits, Risto Jalkanen, Carmen Büttner. (2009). Cherry leaf roll virus – an emerging virus in Finland? Silva Fennica vol. 43 no. 5 article id 169. https://doi.org/10.14214/sf.169
Keywords: Betula pendula; Betula pubescens; Betula nana; IC-RT-PCR; 3' non-coding region; CLRV; phylogenetic relationship
Abstract | View details | Full text in PDF | Author Info
Cherry leaf roll virus, CLRV, is a plant pathogen that infects a variety of deciduous trees and shrubs in temperate regions. Little is known about its occurrence at high latitudes and especially in Finnish birch species. Still, symptoms that seemed to be associated with CLRV such as vein banding, leaf roll and decline have been observed in birch trees throughout the country since the summer of 2002. Six different birch species, subspecies or varieties, i.e. Betula pubescens subsp. pubescens (downy birch), B. pendula (silver birch), B. nana (dwarf birch), B. pubescens var. appressa (Kiilopää birch), B. pubescens subsp. czerepanovii (mountain birch) and B. pendula var. carelica (curly birch) originating from all over Finland were assessed by immunocapture-reverse transcription-polymerase chain reaction (IC-RT-PCR) for CLRV infection. It was shown that CLRV is widely distributed in B. pendula and B. pubescens throughout the country. Furthermore, dwarf birch, mountain birch, Kiilopää birch and curly birch were confirmed to be previously unkown hosts of CLRV. Genetic analysis of virus sequence variants originating from Finnish birch trees revealed atypical phylogenetic relationships. In contrast to CLRV isolates from birches growing in the United Kingdom and Germany which clustered exclusively within group A, Finnish CLRV isolates belonged either to group B, D or E. Thus, virus population structure in Finnish birches seems to be more variable and host plant dependency seems not to apply for Finnish CLRV isolates.
  • Bargen, Humboldt-Universität zu Berlin, Department für Nutzpflanzen- und Tierwissenschaften, Fachgebiet Phytomedizin, Lentzeallee 55/57, 14195 Berlin, Germany E-mail: susanne.von.bargen@agrar.hu-berlin.de (email)
  • Grubits, Humboldt-Universität zu Berlin, Department für Nutzpflanzen- und Tierwissenschaften, Fachgebiet Phytomedizin, Lentzeallee 55/57, 14195 Berlin, Germany E-mail: eg@nn.de
  • Jalkanen, Finnish Forest Research Institute, Rovaniemi Research Unit, P.O. Box 16, FI-96301 Rovaniemi, Finland E-mail: risto.jalkanen@metla.fi
  • Büttner, Humboldt-Universität zu Berlin, Department für Nutzpflanzen- und Tierwissenschaften, Fachgebiet Phytomedizin, Lentzeallee 55/57, 14195 Berlin, Germany E-mail: cb@nn.de
article id 193, category Research article
Jaume Gort, Ane Zubizarreta Gerendiain, Heli Peltola, Pertti Pulkkinen, Johanna Routa, Raimo Jaatinen. (2009). Differences in fibre properties in Scots pine (Pinus sylvestris L.) genetic entries grown at different spacing and sites. Silva Fennica vol. 43 no. 3 article id 193. https://doi.org/10.14214/sf.193
Keywords: fibre length; fibre width; genetic entry; growth; wood density; coarseness; spacing
Abstract | View details | Full text in PDF | Author Info
In forest breeding, stem volume growth and sawn timber quality indicators have been used as the most important selection traits for Scots pine, whereas less attention has been given to characteristics such as fibre properties. In the above context, we investigated the differences in fibre properties (i.e. fibre length, fibre width and coarseness) in 20 year old Scots pine (Pinus sylvestris L.) genetic entries as affected by spacing and site, but also the phenotypic correlations between fibre properties, yield and wood density. The study was based on materials harvested from 10 genetic entries grown in a spacing trial (site 1) in central Finland, with a current stand density of 2000 (spacing 1), 2000–2500 (spacing 2) and 4000 trees/ha (spacing 3). In order to study the effects of site, we harvested additional material (4 of 7 genetic entries same as on site 1) from a trial located in southern Finland with a corresponding stand density of 2000 trees/ha (site 2). On site 1, spacing 1 and 3, all average values for analysed fibre properties were similar. In spacing 2 average values were slightly higher. On site 2, the average values for different fibre properties were similar compared to the corresponding spacing 1 on site 1. Spacing affected (p < 0.05) all average fibre properties on site 1; as did also site, when comparing same genetic entries grown on both sites. Regardless of spacing and site, the phenotypic correlations between average fibre length, fibre width and coarseness showed, on average, moderate to strong correlation (p < 0.05). Fibre width showed, in general, low and positive phenotypic correlation with diameter at breast height, stem volume and wood density on site 1. However, as a whole, the ranking of genetic entries changed depending on the trait and spacing considered. Thus, no overall ranking between genetic entries was possible.
  • Gort, University of Joensuu, Faculty of Forest Sciences, FI-80101 Joensuu, Finland E-mail: jaume.gort@joensuu.fi (email)
  • Zubizarreta Gerendiain, University of Joensuu, Faculty of Forest Sciences, FI-80101 Joensuu, Finland E-mail: azg@nn.fi
  • Peltola, University of Joensuu, Faculty of Forest Sciences, FI-80101 Joensuu, Finland E-mail: hp@nn.fi
  • Pulkkinen, Finnish Forest Research Institute, Haapastensyrjä Breeding Station, Karkkilantie E-mail: pp@nn.fi
  • Routa, University of Joensuu, Faculty of Forest Sciences, FI-80101 Joensuu, Finland E-mail: jr@nn.fi
  • Jaatinen, Finnish Forest Research Institute, Haapastensyrjä Breeding Station, Karkkilantie E-mail: rj@nn.fi
article id 192, category Research article
Heli Peltola, Jaume Gort, Pertti Pulkkinen, Ane Zubizarreta Gerendiain, Jouni Karppinen, Veli-Pekka Ikonen. (2009). Differences in growth and wood density traits in Scots pine (Pinus sylvestris L.) genetic entries grown at different spacing and sites. Silva Fennica vol. 43 no. 3 article id 192. https://doi.org/10.14214/sf.192
Keywords: genetic entry; stem volume; height; diameter; wood property traits; phenotypic correlation
Abstract | View details | Full text in PDF | Author Info
In forest breeding, stem volume has typically taken as the most important selection trait, whereas less attention has been given to wood density traits. In this work, we investigated the effects of spacing and genetic entry on the growth, yield and wood density traits in 20 year old Scots pines (Pinus sylvestris L.) based on 10 genetic entries harvested from a spacing trial (stand density range 2000–4000 trees/ha) in central Finland. In order to study also the site effects, we harvested additional material from a trial located in southern Finland (stand density of 2000 trees/ha). Compared to growth and yield properties, wood density traits showed a lower phenotypic variation. Phenotypic correlations among different traits were negative, and mostly moderate to high, suggesting that selection for one trait would simultaneously affect the others. In addition, moderate to strong phenotypic correlations were found among different wood density traits. Stem volume (V) and breast height diameter (DBH) were the largest in widest spacing, whereas in the densest one tree height (H) and latewood percentage were the highest. Genetic entry affected H and wood density traits regardless of spacing. When comparing two sites (with same stand density), genetic entry affected H, whereas site affected DBH and wood density traits. Ranking between genetic entries changed depending on the trait, spacing or site considered. Therefore, no overall ranking was possible. However, we could identify genetic entries having a high V and a relatively high wood density, showing potential for future forest regeneration material.
  • Peltola, University of Joensuu, Faculty of Forest Sciences, FI-80101 Joensuu, Finland E-mail: heli.peltola@joensuu.fi (email)
  • Gort, University of Joensuu, Faculty of Forest Sciences, FI-80101 Joensuu, Finland E-mail: jg@nn.fi
  • Pulkkinen, Finnish Forest Research Institute, Haapastensyrjä Breeding Station, Karkkilantie 247, FI-12600 Läyliäinen, Finland E-mail: pp@nn.fi
  • Zubizarreta Gerendiain, University of Joensuu, Faculty of Forest Sciences, FI-80101 Joensuu, Finland E-mail: azg@nn.fi
  • Karppinen, University of Joensuu, Faculty of Forest Sciences, FI-80101 Joensuu, Finland E-mail: jk@nn.fi
  • Ikonen, University of Joensuu, Faculty of Forest Sciences, FI-80101 Joensuu, Finland E-mail: vpi@nn.fi
article id 205, category Research article
Pekka Vakkari, Mari Rusanen, Katri Kärkkäinen. (2009). High genetic differentiation in marginal populations of European white elm (Ulmus laevis). Silva Fennica vol. 43 no. 2 article id 205. https://doi.org/10.14214/sf.205
Keywords: marginal populations; genetic differentiation; genetic conservation; Ulmus
Abstract | View details | Full text in PDF | Author Info
Studies on the amount of genetic variation in marginal populations and differentiation between them are essential for assessment of best gene conservation strategies and sampling schemes. Thirteen marginal populations of Ulmus laevis in southern Finland and one in Estonia were investigated for genetic variation in 20 allozyme loci. Population differentiation among Finnish stands was high, Fst = 0.290, and mean genetic diversity low, He = 0.088. The differentiation follows the isolation-by-distance structure within the core of the distribution area (lake Vanajavesi). Fairly high frequency of recurrent genotypes was observed, but this did not have an influence on the genetic parameters. The observed genetic structure is consistent with the central-marginal hypothesis. In the light of the results, the Finnish gene conservation strategy for U. laevis seems to be on a sound basis.
  • Vakkari, Finnish Forest Research Institute, Vantaa Research Unit, P.O. Box 18, FI-01301 Vantaa, Finland E-mail: pekka.vakkari@metla.fi (email)
  • Rusanen, Finnish Forest Research Institute, Vantaa Research Unit, P.O. Box 18, FI-01301 Vantaa, Finland E-mail: mr@nn.fi
  • Kärkkäinen, Finnish Forest Research Institute, Vantaa Research Unit, P.O. Box 18, FI-01301 Vantaa, Finland E-mail: kk@nn.fi
article id 229, category Research article
Carmen Martín, Teresa Parra, Margarita Clemente-Muñoz, Esteban Hernández-Bermejo. (2008). Genetic diversity and structure of the endangered Betula pendula subsp. fontqueri populations in the south of Spain. Silva Fennica vol. 42 no. 4 article id 229. https://doi.org/10.14214/sf.229
Keywords: Betula pendula; B. pendula subsp. fontqueri; genetic diversity; population; RAPD
Abstract | View details | Full text in PDF | Author Info
Betula pendula subsp. fontqueri, present in the south of Spain, has been considered in danger of extinction and, for this reason, some regional governments in Spain have included their populations in conservation programmes. In order to establish the genetic structure of the Betula pendula subsp. fontqueri populations, a random amplified polymorphic DNA (RAPD) analysis was carried out. Two B. pubescens populations were included in the study as taxonomic controls. B. pendula subsp. fontqueri populations were clearly differentiated through UPGMA, and showed significant pairwise genetic distance (ΦST) values between all pairs of populations obtained by AMOVA. Genetic diversity found between populations was not correlated to geographical distances. The significant differences among populations must be due to progressive isolation of Betula populations along their paleogeographical history, and more recently to the drastic fragmentation and reduction of some of these populations. The results obtained in this work show clear genetic differences which could be considered in the management of conservation strategies for Betula pendula subsp. fontqueri in its Iberian meridional distribution.
  • Martín, Departamento de Biología Vegetal, Escuela Técnica Superior de Ingenieros Agrónomos de Madrid, Universidad Politécnica de Madrid, Ciudad Universitaria s/n, 28040-Madrid, Spain E-mail: mariacarmen.martin@upm.es (email)
  • Parra, Departamento de Ciencias y Recursos Agrícolas y Forestales, Universidad de Córdoba, Avda. Linneo s/n, 14004-Córdoba, Spain E-mail: tp@nn.es
  • Clemente-Muñoz, Departamento de Ciencias y Recursos Agrícolas y Forestales, Universidad de Córdoba, Avda. Linneo s/n, 14004-Córdoba, Spain E-mail: mcm@nn.es
  • Hernández-Bermejo, Departamento de Ciencias y Recursos Agrícolas y Forestales, Universidad de Córdoba, Avda. Linneo s/n, 14004-Córdoba, Spain E-mail: ehb@nn.es
article id 299, category Research article
Hongcheng Zeng, Timo Pukkala, Heli Peltola, Seppo Kellomäki. (2007). Application of ant colony optimization for the risk management of wind damage in forest planning. Silva Fennica vol. 41 no. 2 article id 299. https://doi.org/10.14214/sf.299
Keywords: harvest scheduling; heuristics; genetic algorithms; simulated annealing; spatial optimization
Abstract | View details | Full text in PDF | Author Info
Ant colony optimization (ACO) is still quite a new technique and seldom used in the field of forest planning compared to other heuristics such as simulated annealing and genetic algorithms. This work was aimed at evaluating the suitability of ACO for optimizing the clear-cut patterns of a forest landscape when aiming at simultaneously minimizing the risk of wind damage and maintaining sustainable and even flow of periodical harvests. For this purpose, the ACO was first revised and the algorithm was coded using the Visual Basic Application of the ArcGIS software. Thereafter, the performance of the modified ACO was demonstrated in a forest located in central Finland using a 30-year planning period. Its performance was compared to simulated annealing and a genetic algorithm. The revised ACO performed logically since the objective function value was improving and the algorithm was converging during the optimization process. The solutions maintained a quite even periodical harvesting timber while minimizing the risk of wind damage. Implementing the solution would result in smooth landscape in terms of stand height after the 30-year planning period. The algorithm is quite sensitive to the parameters controlling pheromone updating and schedule selecting. It is comparable in solution quality to simulated annealing and genetic algorithms.
  • Zeng, University of Joensuu, Faculty of Forest Sciences, P. O. Box 111, FI-80101 Joensuu, Finland E-mail: hongcheng.zeng@joensuu.fi (email)
  • Pukkala, University of Joensuu, Faculty of Forest Sciences, P. O. Box 111, FI-80101 Joensuu, Finland E-mail: tp@nn.fi
  • Peltola, University of Joensuu, Faculty of Forest Sciences, P. O. Box 111, FI-80101 Joensuu, Finland E-mail: hp@nn.fi
  • Kellomäki, University of Joensuu, Faculty of Forest Sciences, P. O. Box 111, FI-80101 Joensuu, Finland E-mail: sk@nn.fi
article id 291, category Research article
Yildiray Lise, Zeki Kaya, Fikret Isik, Rumi Sabuncu, Irfan Kandemir, Sertaç Önde. (2007). The impact of over-exploitation on the genetic structure of Turkish red pine (Pinus brutia Ten.) populations determined by RAPD markers. Silva Fennica vol. 41 no. 2 article id 291. https://doi.org/10.14214/sf.291
Keywords: Pinus brutia Ten.; RAPD-PCR; human over-exploitation; genetic structure; inbreeding
Abstract | View details | Full text in PDF | Author Info
To determine the possible impact of over-exploitation on the genetic structure of Turkish red pine (Pinus brutia Ten.) populations, three natural and three over-exploited (human degraded) populations of the species in the Mediterranean region of Turkey were investigated with Randomly Amplified Polymorphic DNA (RAPD). With the 80 RAPD primers tested, 12 of them yielded 137 polymorphic RAPD fragments. Four of the studied populations maintained unique fragments. The mean proportion of polymorphic fragments for all populations ranged from 89.8 to 98.9% and there were no significant differences between natural (94.8%) vs. over-exploited populations (92.7%). The estimated heterozygosity values suggested that Turkish red pine maintains high levels of genetic diversity (range 0.24–0.28) though studied populations and grouped ones as natural (He = 0.28) vs. over-exploited (0.27) did not differ significantly. The mean FST value indicated that the large portion of the total genetic diversity was within populations (93%), but this value was lower in the natural populations (92%) than in the over-exploited ones (94%). In over-exploited populations, excess of homozygosity was observed (about 6% higher) as compared to natural populations, indicating impacts of inbreeding in P. brutia.
  • Lise, Department of Biological Sciences, Middle East Technical University, 06531, Ankara, Turkey E-mail: yl@nn.tr
  • Kaya, Department of Biological Sciences, Middle East Technical University, 06531, Ankara, Turkey E-mail: kayaz@metu.edu.tr (email)
  • Isik, North Carolina State University, Raleigh, USA E-mail: fi@nn.us
  • Sabuncu, Southwest Anatolia Forest Research Institute, Antalya, Turkey E-mail: rs@nn.tr
  • Kandemir, Department of Biology, Zonguldak Karaelmas University, 67100, Zonguldak, Turkey E-mail: ik@nn.tr
  • Önde, Department of Biological Sciences, Middle East Technical University, 06531, Ankara, Turkey E-mail: so@nn.tr
article id 304, category Research article
Joanna Kosinska, Andrzej Lewandowski, Wladyslaw Chalupka. (2007). Genetic variability of Scots pine maternal populations and their progenies. Silva Fennica vol. 41 no. 1 article id 304. https://doi.org/10.14214/sf.304
Keywords: Pinus sylvestris L.; genetic variation; allozymes; gene conservation
Abstract | View details | Full text in PDF | Author Info
The genetic variability of Scots pine was investigated in six populations from Poland representing two maternal populations and their natural and artificial progenies. Thirteen enzyme systems controlled by 25 allozyme loci were analyzed using starch gel electrophoresis. Progeny populations maintained a high and similar level of genetic variation to that observed in the maternal populations. As expected, much closer genetic relationships were observed between maternal populations and their respective progeny than between the two maternal populations themselves. Progeny populations had the same major alleles, but differed in the number of rare alleles. Therefore, probably not all rare alleles were transferred from the maternal stands to the progenies. In addition, new rare alleles appeared in the progeny populations, possibly as a result of external pollen flow into the maternal populations.
  • Kosinska, Department of Human Medical Genetics, Medical University of Warsaw, Oczki 1, 02-007 Warsaw, Poland E-mail: jk@nn.pl
  • Lewandowski, Polish Academy of Sciences, Institute of Dendrology, 62-035 Kórnik, Poland E-mail: al@nn.pl (email)
  • Chalupka, Polish Academy of Sciences, Institute of Dendrology, 62-035 Kórnik, Poland E-mail: wc@nn.pl
article id 314, category Research article
Yuhua Wang, Helena Korpelainen, Chunyang Li. (2006). Microsatellite polymorphism in the edaphic spruce, Picea asperata, originating from the mountains of China. Silva Fennica vol. 40 no. 4 article id 314. https://doi.org/10.14214/sf.314
Keywords: genetic diversity; microsatellite polymorphism; micro-geographic differentiation; natural selection; mutation
Abstract | View details | Full text in PDF | Author Info
Microsatellite variation of Picea asperata Mast. originating from the mountains of China was investigated by analyzing variation at seven SSR loci in 250 individuals representing ten populations. A fair degree of genetic diversity and considerable population subdivision occurred with the mean gene diversity (H) of 0.707, and genetic distances among populations varying between 0.121 and 0.224 (FST) and between 0.100 and 0.537 (RST). However, inter-population genetic distances showed no correlation with geographic distances between the population sites. This ruled out a simple isolation by distance model and suggested that migration does not have a great impact. In fact, the amount of gene flow, detected using private alleles, was very low, equaling only 0.753. Allele permutation tests revealed that stepwise-like mutations, coupled with genetic drift, could contribute to population differentiation. Moreover, significant genetic differences between populations were detected at most loci. The results indicate that natural selection, presumably through environmental stress, may be one of the main factors causing micro-geographical differentiation in the genetic structure of P. asperata. Based on SSR genotypes, 70% of the 250 individuals were correctly classified into their sites of origin. This suggests that microsatellites (SSRs) are effective in distinguishing genotypes of P. asperata originating from diverse eco-geographical sites in China.
  • Wang, Chengdu Institute of Biology, Chinese Academy of Sciences, P.O. Box 416, Chengdu 610041, China; Graduate School of the Chinese Academy of Sciences, Beijing 100039, China E-mail: yw@nn.cn
  • Korpelainen, Department of Applied Biology, P.O. Box 27, FI-00014 University of Helsinki, Finland E-mail: hk@nn.fi
  • Li, Chengdu Institute of Biology, Chinese Academy of Sciences, P.O. Box 416, Chengdu 610041, China E-mail: licy@cib.ac.cn (email)
article id 476, category Research article
Ignazio Monteleone, Diana Ferrazzini, Piero Belletti. (2006). Effectiveness of neutral RAPD markers to detect genetic divergence between the subspecies uncinata and mugo of Pinus mugo Turra. Silva Fennica vol. 40 no. 3 article id 476. https://doi.org/10.14214/sf.476
Keywords: molecular markers; population differentiation; genetic diversity; Pinus mugo; mountain pine; dwarf mountain pine
Abstract | View details | Full text in PDF | Author Info
Fifteen populations of Pinus mugo subsp. mugo (shrub) and Pinus mugo subsp. uncinata (erect), located in the Alps, were investigated through genetic variation scored at 64 polymorphic RAPD loci. In addition, morphological traits of the female cones were analysed. According to AMOVA most of the genetic variation was found within populations (83.39%), and only 1.25% of it between subspecies. Populations differed in terms of their internal genetic variation, with Nei’s gene diversity ranging from 0.227 to 0.397. Morphological data showed differences between subspecies, although none of the populations showed full accordance with expectations. Significant correlation was found between matrices for geographical and morphological distances, while genetic distances were not correlated with any other aspect. The efficacy of morphological and RAPD markers in discriminating between subspecies, and the contribution of the results in relation to the preservation of biodiversity, are discussed.
  • Monteleone, DI.VA.P.R.A., Plant Genetics and Breeding, University of Turin, via Leonardo da Vinci 44, I-10095 Grugliasco, Italy E-mail: im@nn.it
  • Ferrazzini, DI.VA.P.R.A., Plant Genetics and Breeding, University of Turin, via Leonardo da Vinci 44, I-10095 Grugliasco, Italy E-mail: df@nn.it
  • Belletti, DI.VA.P.R.A., Plant Genetics and Breeding, University of Turin, via Leonardo da Vinci 44, I-10095 Grugliasco, Italy E-mail: piero.belletti@unito.it (email)
article id 326, category Research article
Xuejiang Zhang, Helena Korpelainen, Chunyang Li. (2006). Microsatellite variation of Quercus aquifolioides populations at varying altitudes in the Wolong Natural Reserve of China. Silva Fennica vol. 40 no. 3 article id 326. https://doi.org/10.14214/sf.326
Keywords: genetic differentiation; genetic variation; altitudinal gradients; microsatellites; Quercus aquifolioides
Abstract | View details | Full text in PDF | Author Info
Genetic variation and differentiation were investigated among five natural populations of Quercus aquifolioides occurring along an altitudinal gradient that varied from 2000 to 3600 m above sea level in the Wolong Natural Reserve of China, by analyzing variation at six microsatellite loci. The results showed that the populations were characterized by relatively high intra-population variation with the average number of alleles equaling 11.33 per locus and the average expected heterozygosity (HE) being 0.779. The amount of genetic variation varied only little among populations, which suggests that the influence of altitude factors on microsatellite variation is limited. However, there is a significantly positive correlation between altitude and the number of low-frequency alleles (R2 = 0.97, P < 0.01), which indicates that Q. aquifolioides from high altitudes has more unique variation, possibly enabling adaptation to severe conditions. F statistics showed the presence of a slight deficiency of heterozygosity (FIS = 0.136) and a low level of differentiation among populations (FST = 0.066). The result of the cluster analysis demonstrated that the grouping of populations does not correspond to the altitude of the populations. Based on the available data, it is likely that the selective forces related to altitude are not strong enough to significantly differentiate the populations of Q. aquifolioides in terms of microsatellite variation.
  • Zhang, Chengdu Institute of Biology, Chinese Academy of Sciences, P.O. Box 416, Chengdu 610041, P. R. China; Graduate School of the Chinese Academy of Sciences, Beijing 100039, P. R. China E-mail: xz@nn.cn (email)
  • Korpelainen, Department of Applied Biology, P.O. Box 27, FI-00014 University of Helsinki, Finland E-mail: hk@nn.fi
  • Li, Chengdu Institute of Biology, Chinese Academy of Sciences, P.O. Box 416, Chengdu 610041, P. R. China E-mail: licy@cib.ac.cn
article id 381, category Research article
Jianxun Luo, Yuhua Wang, Helena Korpelainen, Chunyang Li. (2005). Allozyme variation in natural populations of Picea asperata. Silva Fennica vol. 39 no. 2 article id 381. https://doi.org/10.14214/sf.381
Keywords: allozymes; genetic variability; Picea asperata
Abstract | View details | Full text in PDF | Author Info
A survey of allozymic alleles and genetic diversity was conducted for ten natural populations of Picea asperata Mast. originating from the mountains of Southwest China. A total of twenty-seven alleles at seventeen loci were observed. Ten of the loci were found monomorphic. Our results showed that the populations sampled were characterized by low genetic diversity (mean He = 0.096) and a low level of inbreeding (mean Fis = 0.005). The UPGMA tree of genetic relationships indicated that there was significant differentiation among populations. The coefficient of genetic differentiation among populations, based on Fst, equaled 0.311. Such extensive inter-populational differentiation detected in P. asperata could have resulted from allele frequency divergence among populations, particularly, in one population. Introgression from another species, variation in environmental conditions, and differing selection pressures could be some of the factors attributing to significant differences among populations. In addition, our results showed that the geographic and genetic distances were not correlated in the populations of P. asperata. Based on the genetic information obtained, we concluded that monitoring appropriate genetic markers may be an effective means of identifying potential genetic changes occurring during forest tree evolution.
  • Luo, Sichuan Academy of Forestry, Chengdu 610081, P. R. China E-mail: jl@nn.cn
  • Wang, Chengdu Institute of Biology, Chinese Academy of Sciences, P.O. Box 416, Chengdu 610041, P. R. China; Graduate School of the Chinese Academy of Sciences, Beijing 100039, P. R. China E-mail: yw@nn.cn
  • Korpelainen, Department of Applied Biology, P.O. Box 27, FI-00014 University of Helsinki, Finland E-mail: hk@nn.fi
  • Li, Chengdu Institute of Biology, Chinese Academy of Sciences, P.O. Box 416, Chengdu 610041, P. R. China E-mail: licy@cib.ac.cn (email)
article id 396, category Research article
Timo Pukkala, Mikko Kurttila. (2005). Examining the performance of six heuristic optimisation techniques in different forest planning problems. Silva Fennica vol. 39 no. 1 article id 396. https://doi.org/10.14214/sf.396
Keywords: genetic algorithms; simulated annealing; ecological planning; habitat suitability index (HSI); Hero; random search; tabu search
Abstract | View details | Full text in PDF | Author Info
The existence of multiple decision-makers and goals, spatial and non-linear forest management objectives and the combinatorial nature of forest planning problems are reasons that support the use of heuristic optimisation algorithms in forest planning instead of the more traditional LP methods. A heuristic is a search algorithm that does not necessarily find the global optimum but it can produce relatively good solutions within reasonable time. The performance of different heuristics may vary depending on the complexity of the planning problem. This study tested six heuristic optimisation techniques in five different, increasingly difficult planning problems. The heuristics were evaluated with respect to the objective function value that the techniques were able to find, and the time they consumed in the optimisation process. The tested optimisation techniques were 1) random ascent (RA), 2) Hero sequential ascent technique (Hero), 3) simulated annealing (SA), 4) a hybrid of SA and Hero (SA+Hero), 5) tabu search (TS) and 6) genetic algorithm (GA). The results, calculated as averages of 100 repeated optimisations, were very similar for all heuristics with respect to the objective function value but the time consumption of the heuristics varied considerably. During the time the slowest techniques (SA or GA) required for convergence, the optimisation could have been repeated about 200 times with the fastest technique (Hero). The SA+Hero and SA techniques found the best solutions for non-spatial planning problems, while GA was the best in the most difficult problems. The results suggest that, especially in spatial planning problems, it is a benefit if the method performs more complicated moves than selecting one of the neighbouring solutions. It may also be beneficial to combine two or more heuristic techniques.
  • Pukkala, University of Joensuu, Faculty of Forestry, P.O. BOX 111, FI-80101 Joensuu, Finland E-mail: timo.pukkala@forest.joensuu.fi (email)
  • Kurttila, Finnish Forest Research Institute, Joensuu Research Centre, P.O. Box 68, FI-80101 Joensuu, Finland E-mail: mk@nn.fi
article id 491, category Research article
Lars Rytter, Lars-Göran Stener. (2003). Clonal variation in nutrient content in woody biomass of hybrid aspen (Populus tremula L. x P. tremuloides Michx.). Silva Fennica vol. 37 no. 3 article id 491. https://doi.org/10.14214/sf.491
Keywords: growth; branches; genetic correlations; heritability; nutrient concentration; nutrient removal; stems
Abstract | View details | Full text in PDF | Author Info
Differences in the nutrient concentrations and nutrient amounts of stems and branches amongst clones of hybrid aspen (Populus tremula L. x P. tremuloides Michx.) were investigated. Seven clones with superior and seven with medium growth rates were selected from a test of 119 clones in southern Sweden. Four trees per clone were randomly identified and harvested in dormant conditions. Sample discs from the stems and branches were collected and analysed for N, K, P, Ca, Mg, and S concentrations, as well as wood density. The analyses revealed significant genetic differences in wood density, K, P, and Mg concentrations in the stems. There were weak (non-significant) and negative genetic correlations between stem volume and concentrations of all the nutrients, except potassium, suggesting that nutrient-efficient clones could be selected without significantly sacrificing genetic gain for growth. In the branches K, Ca, and Mg concentrations differed significantly among clones. After selecting more nutrient efficient clones, the potential savings of nutrients compared with current hybrid aspen material was estimated to be around 5%, which seems fairly low, at least in a short-term perspective. However, the use of clones with different nutrient storage strategies may be regarded as a possible way in the long run to save nutrients in hybrid aspen ecosystems, or of removing them when sludge is applied.
  • Rytter, Forestry Research Institute of Sweden, Skogforsk, Ekebo 2250, SE-26890, Svalöv, Sweden E-mail: lars.rytter@skogforsk.se (email)
  • Stener, Forestry Research Institute of Sweden, Skogforsk, Ekebo 2250, SE-26890, Svalöv, Sweden E-mail: lgs@nn.se
article id 601, category Research article
Ricardo Alía, Javier Moro-Serrano, Eduardo Notivol. (2001). Genetic variability of Scots pine (Pinus sylvestris) provenances in Spain: growth traits and survival. Silva Fennica vol. 35 no. 1 article id 601. https://doi.org/10.14214/sf.601
Keywords: Spain; Scots pine; genetic variation; provenances; GE interaction
Abstract | View details | Full text in PDF | Author Info
Plants obtained from seed of 16 Spanish and 6 German provenances of Scots pine (Pinus sylvestris L.) were installed at five trial sites distributed throughout the natural range of the species in Spain. Five years after planting (7 years of age) the experimental material was measured for total height, diameter, number of twigs at the fourth year whorl and survival. The analysis confirmed that the rate of height growth of the Spanish is lower than that of the German provenances, whereas for the other traits the best Spanish compare favourably with the Germans. Provenance by site interaction was very significant (P < 0.01) for most traits. Attempts to model the interaction of Spanish provenances on height by simultaneous introduction of some climatic and geographic covariates on both factors were not successful but a multiplicative model with one bilinear term was enough to provide a sensible explanation of this interaction. Usually, provenances closest to each trial site were found better adapted than more distant ones but some provenances of close origin presented a different behaviour. Processes of adaptation and selection of these ancient populations could be considered as the main factors to cause this interaction.
  • Alía, CIFOR-INIA, Unidad de Mejora Forestal, 28080 Madrid, Spain E-mail: ra@nn.es
  • Moro-Serrano, CIFOR-INIA, Unidad de Mejora Forestal, 28080 Madrid, Spain E-mail: jmoro@inia.es (email)
  • Notivol, Unidad de Recursos Forestales, SIA-DGA, Ca de Montañana 179, 50080 Zaragoza, Spain E-mail: en@nn.es
article id 689, category Research article
Erik W. Andersson, Kostas A. Spanos, Timothy J. Mullin, Dag Lindgren. (1998). Phenotypic selection compared to restricted combined index selection for many generations. Silva Fennica vol. 32 no. 2 article id 689. https://doi.org/10.14214/sf.689
Keywords: genetic diversity; heritability; status number; phenotypic selection; index selection
Abstract | View details | Full text in PDF | Author Info
A breeding population has been subjected to repeated selection and crossing by simulation. Unrestricted phenotypic selection and restricted combined index selection were compared at the same effective number for five generations. Results show that phenotypic selection often achieves the gain and diversity possible to achieve by combined index selection but the relative efficiency is different for different family sizes and heritabilities. When phenotypic selection was compared with restricted combined index method at low heritabilities, both methods performed almost equally in terms of gain at the same effective number in small family sizes, although in large families, phenotypic selection was less efficient. At high heritabilities phenotypic selection was as efficient as combined index selection. Phenotypic selection was more efficient in conserving additive variance than combined index selection over five generations compared at the same gain and effective number. The introduction of a dominance component to the total variance had little effect. An increased breeding population size by a factor of ten resulted in an increased additive gain by app. 15%. The conclusion is that even though combined index selection is superior in identifying and extracting the potential for breeding achievements, it is generally not performing better than mass selection when compared at the same effective population size in small families.
  • Andersson, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, S-901 83, Umeå, Sweden E-mail: erik.andersson@genfys.slu.se (email)
  • Spanos, N.AG.RE.F.-Forest Research Institute, 57006 Vassilika, Thessaloniki, Greece E-mail: kas@nn.gr
  • Mullin, Genesis Forest Science Canada Inc., C.P. 64 Succursale Haute-Ville, Québec, QC G1R 4M8 Canada E-mail: tjm@nn.ca
  • Lindgren, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, S-901 83, Umeå, Sweden E-mail: dl@nn.se

Category : Review article

article id 25062, category Review article
Nawwall Arrofaha, Henti H. Rachmat, Andi Salamah, Fifi G. Dwiyanti, Iskandar Z. Siregar, Oliver Gailing, Koichi Kamiya. (2026). What transformation is needed in Indonesia's Dipterocarpaceae research to contribute to global tropical forestry? Silva Fennica vol. 60 no. 2 article id 25062. https://doi.org/10.14214/sf.25062
Keywords: bibliometric analysis; genetic; global; Indonesia; molecular
Highlights: Indonesia is among the countries with the highest Dipterocarp biodiversity; Global studies form two main clusters related to the ecological and phytochemical aspects; Global and Indonesian molecular research focuses on commercially important species; Research in Indonesia is progressing more slowly than global trends, and its domestic research network remains fragmented.
Abstract | Full text in HTML | Full text in PDF | Author Info
The Dipterocarpaceae family comprises the dominant tree species of Southeast Asia’s rainforests, with their centre of diversity in Borneo (Kalimantan) and Sumatra, Indonesia. Despite considerable molecular research on dipterocarps, a comprehensive mapping of the research foci remains lacking. This study aims to identify research priorities, existing gaps, and methodological trends in Dipterocarpaceae studies within Indonesia to inform future research efforts, shape policy directions, and contribute to global sustainable forest management. Through two distinct searches in the Scopus database, 1174 articles were retrieved for bibliometric analysis, and 94 molecular and genetic research articles were selected according to specific keywords and criteria. Bibliometric and thematic analyses revealed two primary clusters within global studies of Dipterocarpaceae: ecology, forestry, and conservation; and phytochemistry and pharmaceutical applications. However, genetic research is primarily focused on species of notable commercial significance, specifically Rubroshorea leprosula (Miq.) P.S.Ashton & J.Heck. and Rubroshorea parvifolia (Dyer) P.S.Ashton & J.Heck. Notably, molecular and genetic research on Dipterocarpaceae in Indonesia is approximately two decades behind prevailing global trends. The current focus of molecular research in Indonesia is directed towards genetic diversity and population structure, with strong international collaborations but fragmented national networks, highlighting the need to diversify themes and strengthen partnerships. Furthermore, studies on endemic and threatened species are scarce. The findings of this study emphasize the critical need to strengthen national research capacity, advance technological development, and foster both domestic and international collaborations to address these significant knowledge gaps in the global conservation of Dipterocarpaceae.
  • Arrofaha, Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Indonesia, Jl. Prof. Dr. Mahar Mardjono Kampus Universitas Indonesia Depok, Depok 16424, Indonesia ORCID https://orcid.org/0009-0002-8067-9182 E-mail: nawwall.arrofaha@ui.ac.id
  • Rachmat, Research Centre for Ecology, National Research and Innovation Agency, Jl. Raya Jakarta-Bogor Km 46, Cibinong, Bogor, West Java 16911, Indonesia ORCID https://orcid.org/0000-0003-4586-6820 E-mail: hent003@brin.go.id
  • Salamah, Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Indonesia, Jl. Prof. Dr. Mahar Mardjono Kampus Universitas Indonesia Depok, Depok 16424, Indonesia ORCID https://orcid.org/0000-0002-4074-8342 E-mail: salamah@sci.ui.ac.id (email)
  • Dwiyanti, Department of Silviculture, Faculty of Forestry and Environment, IPB University, Academic Ring Road Campus IPB Dramaga, Bogor, West Java 16680, Indonesia ORCID https://orcid.org/0000-0003-0366-3259 E-mail: fifi_dwiyanti@apps.ipb.ac.id
  • Siregar, Department of Silviculture, Faculty of Forestry and Environment, IPB University, Academic Ring Road Campus IPB Dramaga, Bogor, West Java 16680, Indonesia ORCID https://orcid.org/0000-0002-5419-482X E-mail: siregar@apps.ipb.ac.id
  • Gailing, Department of Forest Genetics and Forest Tree Breeding, Georg-August-Universität Göttingen, Büsgenweg 2, 37077 Göttingen, Germany ORCID https://orcid.org/0000-0002-4572-2408 E-mail: ogailin@gwdg.de
  • Kamiya, Graduate School of Agriculture, Ehime University, 3-5-7 Tarumi, Matsuyama, Ehime, 790-8566, Japan ORCID https://orcid.org/0000-0003-3614-9029 E-mail: kkamiya@agr.ehime-u.ac.jp

Category : Research note

article id 10524, category Research note
Arnis Gailis, Pauls Zeltiņš, Roberts Matisons, Andis Purviņš, Juris Augustovs, Valts Vīndedzis, Āris Jansons. (2021). Local adaptation of phenotypic stem traits distinguishes two provenance regions of silver birch in Latvia. Silva Fennica vol. 55 no. 2 article id 10524. https://doi.org/10.14214/sf.10524
Keywords: Betula pendula; population genetics; genetic parameters; climate-smart forestry; phenotypic traits
Highlights: Two provenance subregions in Latvia – coastal and inland – were distinguished; Silver birch populations in inland region possessed better growth, higher heritability, and phenotypic plasticity; Moderate to high heritability for stem quality was estimated in both regions; Silver birch from inland region possesses higher potential for improvement of adaptability.
Abstract | Full text in HTML | Full text in PDF | Author Info

Populations of tree species with a wide geographic range, such as silver birch (Betula pendula Roth), show genetic specialization to native environments, while maintaining high phenotypical plasticity. Accordingly, assessment of local specialization is essential for adaptive management. The aim of the study was to detect geographic patterns of local adaptation of growth and stem quality based on two open-pollinated progeny trials in Latvia testing local material. Two provenance regions differing by continentality were distinguished, which also differed in genetic control of growth traits, likely originating from the post-glacial recolonization of vegetation and subsequent natural adaptation. Heritability of the traits was estimated for each of the distinguished regions, indicating differing patterns of genetic adaptation and potential for future selection. Trees from the more continental inland showed superior growth and possessed higher heritability. The coastal provenance region showed slower growth and intermediate heritability of the respective traits. Moderate to high heritability for stem quality traits was estimated irrespectively of region. Overall, better growth and higher heritability suggests that anthropogenic selection within the best inland provenances may constitute better performing and adaptable breeding population compared to the coastal one. Still, overlapping phenotypical variation and heritability of quality traits implies improved stemwood quality for plywood regardless of the provenance region. High adaptive capacity of silver birch genotypes suggests ability to cope with climatic changes, highlighting its potential for climate-smart forestry.

  • Gailis, Latvian State Forest Research Institute Silava, 111 Rigas street, LV-2169, Salaspils, Latvia E-mail: arnis.gailis@silava.lv
  • Zeltiņš, Latvian State Forest Research Institute Silava, 111 Rigas street, LV-2169, Salaspils, Latvia E-mail: pauls.zeltins@silava.lv (email)
  • Matisons, Latvian State Forest Research Institute Silava, 111 Rigas street, LV-2169, Salaspils, Latvia ORCID https://orcid.org/0000-0002-4042-0689 E-mail: roberts.matisons@silava.lv
  • Purviņš, Latvian State Forest Research Institute Silava, 111 Rigas street, LV-2169, Salaspils, Latvia E-mail: andis.purvins@silava.lv
  • Augustovs, Latvian State Forest Research Institute Silava, 111 Rigas street, LV-2169, Salaspils, Latvia E-mail: juris.augustovs@silava.lv
  • Vīndedzis, Latvian State Forest Research Institute Silava, 111 Rigas street, LV-2169, Salaspils, Latvia E-mail: valts.vindedzis@silava.lv
  • Jansons, Latvian State Forest Research Institute Silava, 111 Rigas street, LV-2169, Salaspils, Latvia ORCID https://orcid.org/0000-0001-7981-4346 E-mail: aris.jansons@silava.lv
article id 5644, category Research note
Jiří Korecký, Jan Bílý, Petr Sedlák, Milan Lstibůrek. (2017). Innovative multiplex and its evaluation for effective genotyping of wild cherry. Silva Fennica vol. 51 no. 3 article id 5644. https://doi.org/10.14214/sf.5644
Keywords: genetic structure; microsatellites; Prunus avium; SSRs; pseudo 15-plex; one-run genotyping
Highlights: We present simple and cost-efficient method of SSR genotyping in cherry species; Seven of fifteen previously published primer sequences have been altered in order to produce complementary amplicons in pseudo 15-plex; The effectiveness and discriminatory power of established multiplex were verified by SSRs analysis of 48 wild cherry trees.
Abstract | Full text in HTML | Full text in PDF | Author Info

Trees from the family Rosaceae play an important role in forest and agricultural ecosystems. Therefore, they are often an object of interest for both forest and horticultural tree breeders. Here, we present the utilization of an effective microsatellite (SSRs) genotyping method for wild cherry (Prunus avium L.) and verified the discriminatory power of the presented multiplex by genotyping 48 genetically distinctive individuals (plus-trees). Concerned loci were previously proven to be cross-compatible among various cultivars of cherry, hence, the method could have a broader utilization beyond to the field of forestry.
Our technique is based on post-PCR processing of 15 polymorphic SSRs loci amplified in three multiplex reactions with fluorescently labeled primers (6-FAM, VIC, PET and NED). All PCR products could be pooled and analyzed simultaneously (pseudo 15-plex). In order to make this approach feasible, we redefined sequences of several primers. Thus, utilizing modified primers provides non-overlapping amplicons of each fluorescent dye.

  • Korecký, Faculty of Forestry and Wood Sciences, Czech University of Life Sciences, Kamýcká 1176, 165 21, Prague, Czech Republic ORCID http://orcid.org/0000-0001-7859-1750 E-mail: korecky@fld.czu.cz (email)
  • Bílý, Faculty of Forestry and Wood Sciences, Czech University of Life Sciences, Kamýcká 1176, 165 21, Prague, Czech Republic ORCID http://orcid.org/0000-0001-5794-0907 E-mail: bily@fld.czu.cz
  • Sedlák, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences, Kamýcká 129, 165 21, Prague, Czech Republic ORCID http://orcid.org/0000-0001-8016-8900 E-mail: sedlak@af.czu.cz
  • Lstibůrek, Faculty of Forestry and Wood Sciences, Czech University of Life Sciences, Kamýcká 1176, 165 21, Prague, Czech Republic ORCID http://orcid.org/0000-0002-6304-6669 E-mail: lstiburek@fld.czu.cz
article id 1415, category Research note
Zorica Šarac, Tanja Dodoš, Nemanja Rajčević, Srdjan Bojović, Petar Marin, Jelena Aleksić. (2015). Genetic patterns in Pinus nigra from the central Balkans inferred from plastid and mitochondrial data. Silva Fennica vol. 49 no. 5 article id 1415. https://doi.org/10.14214/sf.1415
Keywords: genetic differentiation; genetic diversity; the Balkans; European black pine; chloroplast microsatellites; mitochondrial nad7 intron 1; haplotype network
Highlights: Seven populations of Pinus nigra from the central Balkans, representing four infraspecific taxa, were analyzed with chloroplast microsatellites and a mitochondrial locus; Molecular data failed to support infraspecific circumscriptions; Levels of genetic diversities/differentiation at both genomes were in the range of those reported in western Mediterranean populations of P. nigra; Iberian/African and Balkans’ populations share one mtDNA polymorphism and differ in three mutations.
Abstract | Full text in HTML | Full text in PDF | Author Info

Pinus nigra J.F. Arnold, European black pine, is a typical component of Mediterranean and sub-Mediterranean coniferous forests with highly fragmentary distribution. Western Mediterranean populations of this species have been studied genetically to date, while eastern populations from the central Balkans, which are larger and more abundant, are still genetically understudied. We analyzed seven populations of P. nigra representing all infraspecific taxa recognized within the central Balkans (subspecies nigra with varieties nigra and gocensis Đorđević; and subspecies pallasiana (Lamb.) Holmboe with varieties pallasiana and banatica (Endl.) Georgescu et Ionescu), with three chloroplast microsatellites (cpDNA SSRs) and one mitochondrial (mtDNA) locus. Although our molecular data failed to support circumscription of studied infraspecific taxa, we found that genetic patterns at both genomes are in accordance with those found previously in westward populations of this species, that is – exceptionally high levels of genetic diversity (HT = 0.949) and low genetic differentiation (GST = 0.024) at the cpDNA level, and moderate levels of genetic diversity (HT = 0.357) and genetic differentiation (GST = 0.358) at the mtDNA level. Based on genealogical relations of mtDNA types currently present in Balkans’ and Iberian/African populations, we inferred that the ancestral gene pool of P. nigra already harbored polymorphism at position 328 prior to the divergence to two lineages currently present in westward and eastward parts of the species range distribution. Subsequent occurrence of three mutations, which distinguish these two lineages, suggests their long-term isolation.

  • Šarac, University of Niš, Faculty of Sciences and Mathematics, Department of Biology and Ecology, Višegradska 33, 18000 Niš, Serbia E-mail: saraczorica@gmail.com (email)
  • Dodoš, University of Belgrade, Faculty of Biology, Institute of Botany and Botanical Garden “Jevremovac”, Studentski trg 16, 11000 Belgrade, Serbia E-mail: tanjadodos@bio.bg.ac.rs
  • Rajčević, University of Belgrade, Faculty of Biology, Institute of Botany and Botanical Garden “Jevremovac”, Studentski trg 16, 11000 Belgrade, Serbia E-mail: nemanja@bio.bg.ac.rs
  • Bojović, University of Belgrade, Institute for Biological Research “Siniša Stanković”, Boulevard Despota Stefana 142, 11060 Belgrade, Serbia E-mail: bojovic@ibiss.bg.ac.rs
  • Marin, University of Belgrade, Faculty of Biology, Institute of Botany and Botanical Garden “Jevremovac”, Studentski trg 16, 11000 Belgrade, Serbia E-mail: pdmarin@bio.bg.ac.rs
  • Aleksić, University of Belgrade, Institute of Molecular Genetics and Genetic Engineering, Vojvode Stepe 444a, P.O. Box 23, 11000 Belgrade, Serbia E-mail: aleksic_jelena@yahoo.com.au
article id 37, category Research note
D. N. Avtzis, F. A. Aravanopoulos. (2011). Host tree and insect genetic diversity on the borderline of natural distribution: a case study of Picea abies and Pityogenes chalcographus (Coleoptera, Scolytinae) in Greece. Silva Fennica vol. 45 no. 1 article id 37. https://doi.org/10.14214/sf.37
Keywords: bark beetles; genetic bases; marginal populations; northern Greece; Norway spruce
Abstract | View details | Full text in PDF | Author Info
Picea abies (L.) Karst. and Pityogenes chalcographus constitute a commonly observed host tree–insect association in Eurasia, with the natural distribution of the bark beetle overlapping that of Norway spruce. The southernmost borderline of their distributions occurs in the Elatia forest (Mt. Rodopi, Greece), where these interacting organisms may experience severe conditions due to the effects of climate change. In order to assess the dynamics of this host tree–insect association, the genetic diversity of both organisms was studied. In contrast to previous studies, the assessment of molecular diversity was based on the same mitochondrial gene (Cytochrome Oxidase One) sequence for both host and pest. This analysis revealed a remarkably higher genetic diversity of P. chalcographus compared to that of P. abies, something that renders the insect capable not only of adapting to novel environmental conditions, but even of shifting to other host species. On the contrary, P. abies presented a narrow genetic base, a potential drawback at the southern-most region of the species natural distribution. Synthesizing the preliminary outcome for both organisms, it appears that P. chalcographus exhibits an evolutionary advantage over P. abies, something that should be considered when planning conservation strategies for the relict forest of Elatia.
  • Avtzis, Aristotle University of Thessaloniki, Laboratory of Forest Genetics and Tree Breeding, Thessaloniki, Greece E-mail: dimitrios.avtzis@gmail.com (email)
  • Aravanopoulos, Aristotle University of Thessaloniki, Laboratory of Forest Genetics and Tree Breeding, Thessaloniki, Greece E-mail: FAA@nn.fi

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